Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 21 Aligned Residues 282 % Identity 20% Template c2dlcX_ PDB info PDB header:ligase/trna Chain: X: PDB Molecule:tyrosyl-trna synthetase, cytoplasmic; PDBTitle: crystal structure of the ternary complex of yeast tyrosyl-trna2 synthetase Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.							.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.
Query Sequence		T	K	P	I	V	F	S	G	A	Q	P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	D	.	.	.	.	.	.	A	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C	G	I	D	P	E
Query Conservation																																																					.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.
Template Conservation
Template Sequence		R	H	L	K	L	Y	W	G	T	A	P	T	G	R	P	H	C	G	Y	F	V	P	M	T	K	L	A	D	F	L	K	A	G	C	E	V	T	V	L	L	A	D	L	H	A	F	L	D	N	M	K	A	P	L	E	V	V	N	Y	R	A	K	Y	Y	E	L	T	I	K	A	I	L	R	S	I	N	V	P	I	E
Template Known Secondary structure		S												S			B	G	G	G													T	T															T	T	T	S	S		T	T																				T	T				T
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	T	I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	L	V	P	V	G	E	D	Q	K	Q	H	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	K	F	V	V	G	S	S	Y	Q	L	T	P	D	Y	T	M	D	I	F	R	L	S	N	I	V	S	Q	N	D	A	K	R	A	G	A	D	V	V	K	Q	V	A	N	P	L	L	S	G	L	I	Y	P	L	M	Q	A	L	D	E	Q	F	L	D	V	D	C	Q	F	G	G	V	D	Q	R	K	I	F	V
Template Known Secondary structure		T						T					T	S												T	T	S									T	T	T	T	S				S	S			T																T	T		S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K	S	V	V	K	K	I	K	R	A	V	T	D	S	D	E	P	P	V	V	.	.
Query Conservation																																																																																.	.
Alig confidence																						.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation																						.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	E	E	N	L	P	S	L	G	Y	K	K	R	A	H	L	M	N	P	.	.	.	.	.	.	.	.	.	M	V	P	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	S	K	I	D	L	L	E	E	P	K	Q	V	K	K	K	I	N	S	A	F	C	S	P	G	N	V	E	E	N	G	L
Template Known Secondary structure							G	G	G	G	T											.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.				S		B	T	T													S				T	T			S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.										.	.	220	.	.														.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
																234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																		.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																		.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	D	V	Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	.	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	Y	.	.	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R	Y	H	R	F	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																		.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																		.	.																										.
Template Conservation																																																																																	.
Template Sequence		L	S	F	V	Q	Y	V	I	A	P	I	Q	E	L	K	F	G	T	N	H	F	E	F	F	I	D	R	P	E	K	F	G	G	P	I	T	Y	K	S	F	E	E	M	K	L	A	F	K	E	E	K	L	S	P	P	D	L	K	I	G	V	A	D	A	I	N	E	L	L	E	P	I	R	Q	E	F	A	N	N	.
Template Known Secondary structure								T							T	S	S	S	T	T										G	G	G	S						S	S										T	T	S	S																												.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	E	A	F	L	Q	Q	V	M	K	D	G
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	K	E	F	Q	E	A	S	E	K	G
Template Known Secondary structure		.	.	.
Template Predicted Secondary structure		.	.	.
Template SS confidence
					345	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions