Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 10 Aligned Residues 302 % Identity 20% Template c2cycB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with l-tyrosine2 from pyrococcus horikoshii Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.									.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																		.																										.	.	.	.	.	.	.	.
Query SS confidence																																		.																										.	.	.	.	.	.	.	.
Query Sequence		T	K	P	I	V	F	S	G	A	Q	P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	.	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	D	A	Q	K	L	R	K	.	.	.	.	.	.	.	.	A	T	L	D	T	L	A	L	Y	L	A	C	G	I
Query Conservation																																		.																										.	.	.	.	.	.	.	.
Alig confidence																																		.																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	L	Q	H	Y	I	G	F	E	I	S	G	Y	I	H	L	G	T	G	L	M	A	G	A	K	I	A	D	F	Q	K	A	G	I	K	T	R	V	F	L	A	D	W	H	S	W	I	N	D	K	L	G	G	D	L	E	V	I	Q	E	V	A	L	K	Y	F	K	V	G	M	E	K	S	I	E	V	M	G	G
Template Known Secondary structure					B									S			B																	T	T		B													T	T	G	G	G	G												T												T	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		D	P	E	K	S	T	I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	.	A	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	L	V	P	V	G	E	D	Q	K
Query Conservation																																															.
Alig confidence																																															.
Template Conservation
Template Sequence		D	P	K	K	V	E	F	V	L	A	S	E	I	L	E	K	G	D	Y	W	Q	T	V	I	D	I	S	K	N	V	T	L	S	R	V	M	R	S	I	T	I	M	G	R	Q	M	G	E	A	I	D	F	A	K	L	I	Y	P	M	M	Q	V	A	D	I	F	Y	Q	G	V	T	I	A	H	A	G	M	D	Q	R
Template Known Secondary structure			G	G	G	S					T					T													T	T	S							T	T	G	G	G	G	T					T	T			T																T	T		S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.																	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	H	L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K	S
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation																																																																					.	.
Template Sequence		K	A	H	V	I	A	I	E	V	A	Q	K	L	R	Y	H	P	I	V	H	E	G	E	K	L	K	P	V	A	V	H	H	H	L	L	L	G	L	Q	E	P	P	K	W	P	I	E	S	E	E	E	F	K	E	I	K	A	Q	M	K	M	S	K	S	K	P	Y	.	.	S	A	V	F	I	H	D	S	P	E	E
Template Known Secondary structure											G	G	G		S	S	S					T	T														B		S	S			S	S	S	S			S												B	G	G	G	S		G	G	.	.	G	S		B	T	T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230											.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.																																									.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.																																									.	.
Query Sequence		V	V	K	K	I	K	R	A	V	T	D	S	D	E	P	.	.	.	.	.	.	.	.	.	.	P	V	V	R	Y	D	V	Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	Y	.	.	G	H	L	K	G	E	V	A	D	A	V	S	G
Query Conservation																	.	.	.	.	.	.	.	.	.	.																																									.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.																																									.	.
Template Conservation
Template Sequence		I	R	Q	K	L	R	K	A	F	C	P	A	R	E	V	R	Y	N	P	V	L	D	W	V	E	Y	I	I	F	R	E	E	P	T	E	F	T	V	H	R	P	A	K	F	G	G	D	V	T	Y	T	T	F	E	E	L	K	R	D	F	A	E	G	K	L	H	P	L	D	L	K	N	A	V	A	E	Y	L	I	N
Template Known Secondary structure									S				T	T			S	S										T	T	T	S	S	S	S									G	G	G	T						S	S										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	T	E	L	Q	E	R	Y	H	R	F	R	N	D	E	A	F	L	Q	Q	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	E	P	I	R	R	Y	F	E	K	H	P	E	P	L	E	L	M	R	S	V
Template Known Secondary structure			T										S
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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