Job Description P00954 Confidence 98.48% Date Thu Jan 5 10:57:18 GMT 2012 Rank 42 Aligned Residues 195 % Identity 17% Template c2ct8A_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of aquifex aeolicus methionyl-trna2 synthetase complexed with trna(met) and methionyl-adenylate3 anologue Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.									.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure												.																	.	.	.	.																	.							.	.	.	.	.	.	.	.
Query SS confidence												.																	.	.	.	.																	.							.	.	.	.	.	.	.	.
Query Sequence		M	T	K	P	I	V	F	S	G	A	.	Q	P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	.	.	.	.	Q	W	V	N	M	Q	D	D	Y	H	C	I	Y	C	I	V	.	D	Q	H	A	I	T	.	.	.	.	.	.	.	.	V	R	Q	D	A	Q	K	L	R	K	A	T	L	D	T	L	A	L
Query Conservation												.																	.	.	.	.																	.							.	.	.	.	.	.	.	.
Alig confidence												.																	.	.	.	.																	.							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	K	K	F	Y	V	T	T	P	I	Y	Y	V	N	D	V	P	H	L	G	H	A	Y	T	T	I	A	A	D	T	I	A	R	Y	Y	R	L	R	D	Y	D	V	F	F	L	T	G	T	D	E	H	G	L	K	I	Q	K	K	A	E	E	L	G	I	S	P	K	E	L	V	D	R	N	A	E	R	F	K	K	L
Template Known Secondary structure		S												S	S	S																							T	T													S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.													.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	A	C	G	I	D	P	E	K	S	T	I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	.	.	.	.	.	.	.	.	.	.	.	.	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																												.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.
Template Sequence		W	E	F	L	K	I	E	Y	T	K	.	.	F	I	R	T	T	D	P	Y	H	V	K	F	V	Q	K	V	F	E	E	C	Y	K	R	G	D	I	Y	L	G	E	Y	E	K	E	P	S	Y	F	F	R	L	S	K	Y	Q	D	K	L	L	E	L	Y	E	K	N	P	E	F	I	Q	P	D	Y	R	R	N	E	I
Template Known Secondary structure					T	T				S		.	.				T	T	S																	T	T	S																G	G	G	S											S	G	G	G	B		S
Template Predicted Secondary structure												.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
																																									124	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.															.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.															.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	F	D	Y	P	V	L	M	A	A	D	I	.	L	L	Y	Q	T	N	L	V	P	V	G	E	D	Q	.	K	Q	H	L	E	L	S	R	D	I	A	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.															.
Template Conservation
Template Sequence		I	S	F	V	K	Q	G	L	K	D	L	S	V	T	R	P	R	S	R	V	K	W	G	I	P	V	P	F	D	P	E	H	T	I	Y	V	W	F	D	A	L	F	N	Y	I	S	A	L	E	D	K	V	E	I	Y	W	P	A	D	L	H	L	V	G	K	D	I	L	R	F	H	T	V	Y	W	P	A	F	L	M
Template Known Secondary structure					T	T	T											T	T	T			S	S		B		T	T		T	T											T					T	T	T	T							S		S						G	G	G						T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Sequence		S	L	G	Y	E	L	P	K	K	V	F	A	H	G	W	W	.	.	.	.	.	.	.	.	.	.	.	T	V	E	G	K	K	M	S	K	T	.	.	.	L	G	N	V	V	D	P	Y	E
Template Known Secondary structure				T					S									.	.	.	.	.	.	.	.	.	.	.		S	S	S	S				T	T	.	.	.	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.												290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions