Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 25 Aligned Residues 272 % Identity 15% Template c1r6uB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of an active fragment of human tryptophanyl-trna2 synthetase with cytokine activity Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.																		.																			.
Query SS confidence																	.																		.																			.
Query Sequence		T	K	P	I	V	F	S	G	A	Q	P	S	G	E	L	.	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	.	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	.	D	A	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C	G	I	D	P	E	K	S	T
Query Conservation																	.																		.																			.
Alig confidence																	.																		.																			.
Template Conservation
Template Sequence		K	P	F	Y	L	Y	T	G	R	G	P	S	S	E	A	X	H	V	G	H	L	I	P	F	I	F	T	K	W	L	Q	D	V	F	N	V	P	L	V	I	Q	X	T	D	D	E	K	Y	L	W	K	D	L	T	L	D	Q	A	Y	G	D	A	V	E	N	A	K	D	I	I	A	C	G	F	D	I	N	K	T	F
Template Known Secondary structure														S	S			B	G	G	G															T																S	S																				T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.												.	.	.
Predicted Secondary structure																																										.	.																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	.	.	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	.	.	.	.	.	.	.	.	.	.	.	L	V	P
Query Conservation																																										.	.																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.																	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.
Template Sequence		I	F	S	D	L	D	Y	X	G	X	S	S	G	F	Y	K	N	V	V	.	.	.	.	.	K	I	Q	K	H	V	T	F	N	Q	V	K	G	I	F	G	F	T	D	S	D	C	I	G	K	I	S	F	P	A	I	Q	A	A	P	S	F	S	N	S	F	P	Q	I	F	R	D	R	T	D	I	Q	C	L	I	P
Template Known Secondary structure									G	G	G		S	S							.	.	.	.	.					T														T	T	S													G	G	G	S	G	G	G						T	T				S
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.						.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		V	G	E	D	Q	K	Q	H	L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K	S	V	V	K	K	I	K	R	.	A	V
Query Conservation																																																																															.
Alig confidence																													.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																													.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	A	I	D	Q	D	P	Y	F	R	X	T	R	D	V	A	P	R	I	G	Y	P	K	P	A	L	L	.	.	.	.	.	.	.	.	.	H	S	T	F	F	P	A	L	Q	G	.	.	.	.	.	.	.	.	.	.	.	P	N	S	S	I	F	L	T	D	T	A	K	Q	I	K	T	K	V	N	K	H	A	F
Template Known Secondary structure				G	G	G														T	T								.	.	.	.	.	.	.	.	.								S			.	.	.	.	.	.	.	.	.	.	.			S	S		B	T	T														S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.										.	.	.	.	340	.	.	.	.	.												.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.																		.	.
Query SS confidence																															.	.																		.	.
Query Sequence		T	D	S	D	E	P	P	V	V	R	Y	D	V	Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	.	.	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	Y	.	.	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R	Y	H	R	F	R	N	D
Query Conservation																															.	.																		.	.
Alig confidence																															.	.																		.	.
Template Conservation
Template Sequence		S	G	G	R	D	T	I	E	E	H	R	Q	F	G	G	N	C	D	V	D	V	S	F	X	Y	L	T	F	F	L	E	D	D	D	K	L	E	Q	I	R	K	D	Y	T	S	G	A	X	L	T	G	E	L	K	K	A	L	I	E	V	L	Q	P	L	I	A	E	H	Q	A	R	R	K	E	V	T	D	E
Template Known Secondary structure				S		S	S											T	T	T																											T	S	S																										T
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions