Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 36 Aligned Residues 296 % Identity 21% Template c1h3eA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed2 with wild-type trnatyr(gua) and with atp and tyrosinol Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.							.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.																																									.	.	.	.	.	.															.	.	.	.	.
Query SS confidence																.																																									.	.	.	.	.	.															.	.	.	.	.
Query Sequence		T	K	P	I	V	F	S	G	A	Q	P	S	G	E	.	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	D	A	Q	K	.	.	.	.	.	.	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	.	.	.	.	.
Query Conservation																.																																									.	.	.	.	.	.															.	.	.	.	.
Alig confidence																.																																									.	.	.	.	.	.															.	.	.	.	.
Template Conservation
Template Sequence		R	P	L	T	V	K	L	G	A	D	P	T	R	P	D	L	H	L	G	H	A	V	V	L	R	K	M	R	Q	F	Q	E	L	G	H	K	V	V	L	I	I	G	D	F	T	G	M	I	G	D	P	S	G	R	S	K	T	R	P	P	L	T	L	E	E	T	R	E	N	A	K	T	Y	V	A	Q	A	G	K	I
Template Known Secondary structure		S											S	S	S			B															T	T	T									T	T								S	S		S	S																						T	T	T
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		C	G	I	D	P	E	K	S	T	I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	.	.	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	L	V	P	V	G
Query Conservation																																																					.	.
Alig confidence																													.																								.	.
Template Conservation																													.
Template Sequence		L	R	Q	E	P	H	L	F	E	L	R	Y	N	S	E	W	L	E	G	L	T	F	K	E	V	V	R	.	L	T	S	L	M	T	V	A	Q	M	L	E	R	E	D	F	K	K	R	Y	E	A	G	I	P	I	S	L	H	E	L	L	Y	P	F	A	Q	A	Y	D	S	V	A	I	R	A	D	V	E	M	G	G
Template Known Secondary structure		S				T	T	T						T					T	T									.		G	G	G	S						T	T	S									T	T					G	G	G	G	T												T	T		S
Template Predicted Secondary structure																													.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	Q	K	Q	H	L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K	S	V	V	K	K	I	K	R	A	V	T	D	S
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.															.	.	.																						.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.															.	.	.																						.	.	.	.
Template Sequence		T	D	Q	R	F	N	L	L	V	G	R	E	V	Q	R	A	Y	G	Q	S	P	Q	V	C	F	L	M	P	.	.	.	.	.	.	.	.	.	.	L	L	V	G	L	D	G	R	E	K	M	S	K	S	.	.	.	L	D	N	Y	I	G	L	T	E	P	P	E	A	M	F	K	K	L	M	R	V	.	.	.	.
Template Known Secondary structure		G	G	G														T	T											.	.	.	.	.	.	.	.	.	.			B		T	T	S	S	S	B			T	T	.	.	.	T	T				B	T	T	S										T	T	S	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.															.	.	.																						.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.											.	.	.	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																													.																	.
Query SS confidence																																													.																	.
Query Sequence		D	E	P	P	V	V	R	Y	D	V	Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	Y	.	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	.	E	L	Q	E	R	Y	H	R	F	R	N	D	E	A	F	L	Q	Q	V
Query Conservation																																													.																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	P	D	P	L	L	P	S	Y	F	R	L	L	T	D	L	E	E	E	E	I	E	A	L	L	K	A	G	P	V	P	A	H	R	V	L	A	R	L	L	T	A	A	Y	A	L	P	Q	I	P	P	R	I	D	R	A	F	Y	E	S	L	G	Y	A	W	E	A	F	G	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.		G	G	G																																							T	T	S	S	S			S										T	T			G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	D	G	A	E	K	A	S	A	H	A	S	R	T	L	K	A	V	Y	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	E	A	G	P	E	E	V	R	R	A	E	A	R	Y	D	E	V	A	K
Template Known Secondary structure			T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions