Job Description P0ABZ1 Confidence 19.28% Date Thu Jan 5 11:16:43 GMT 2012 Rank 40 Aligned Residues 155 % Identity 17% Template c8iczA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) Resolution 3.10 Å

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		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		G	G	V	Q	P	A	A	L	A	E	L	T	E	V	L	N	G	L	L	D	G	Q	N	L	K	R	S	K	M	G	G	V	R	T	A	A	E	I	I	N	L	M	K	T	Q	Q	.	E	E	A	V	I	T	A	V	R	E	F	D	G	E	L	A	Q	K	I	I	D	E	M	F	L	F	E	N	L	V	D	V	D
Query Conservation																																																.
Alig confidence														.																																		.																							.	.	.	.	.	.
Template Conservation														.																																																									.	.	.	.	.	.
Template Sequence		E	T	L	N	G	G	I	T	D	M	L	T	.	E	L	A	N	F	E	K	N	V	S	Q	A	I	H	K	Y	N	A	Y	R	K	A	A	S	V	I	A	K	Y	P	H	K	I	K	S	G	A	E	A	K	K	L	P	G	V	G	T	K	I	A	E	K	I	D	E	F	.	.	.	.	.	.	L	A	T	G	K
Template Known Secondary structure				S	S									.									T	S																					S										T	S	T	T													.	.	.	.	.	.			S	S	S
Template Predicted Secondary structure														.																																																									.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.	.	80	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.															.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	R	S	I	Q	R	L	L	Q	E	V	D	S	E	S	L	L	I	A	.	.	L	K	G	A	E	Q	P	L	R	E	K	F	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	M	S	Q	R	A	A	D	I	L	R	D	D	L	A	N	R	G	P	V	R	L	S	Q	V	E	N	E	Q	K	A
Query Conservation																					.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	K	L	E	K	I	R	Q	D	D	T	S	S	S	I	N	F	L	T	R	V	S	G	I	G	P	S	A	A	R	K	F	V	D	E	G	I	K	T	L	E	D	L	R	K	N	E	D	K	L	N	H	H	Q	R	I	G	L	K	Y	F	G	D	F	E	K	R	I	P	R	E	E	M	L	Q	M	Q	D	I
Template Known Secondary structure																					T	T	S	T	T											T	T	T			S							T	G	G	G	S										T	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	L	I	V	R	R	L	A	E	T	G	E	M	V	I	G	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	N	E	V	K	K	V	D	S	E	Y	I	A	T	V	C	G	S
Template Known Secondary structure											T	T							S	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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