Job Description P0ABZ1 Confidence 100.00% Date Thu Jan 5 11:16:43 GMT 2012 Rank 3 Aligned Residues 215 % Identity 33% Template c3pkrA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:flagellar motor switch protein; PDBTitle: crystal structure of flig (residue 86-343) from h. pylori Resolution 2.60 Å

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		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	I	E	T	L	N	F	M	E	P	Q	S	A	A	D	L	I	R	D	E	H	P	Q	I	I	A	T	I	L	V	H	L	K	R	A	Q	A	A	D	I	L	A	L	F	D	E	R	L	R	H	D	V	M	L	R	I	A	T	F	G	G	V	Q	P	A	A	L	A	E	L	T	E	V	L	N	G	L	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	F	A	Y	L	G	K	I	K	P	Q	Q	L	A	D	F	I	I	N	E	H	P	Q	T	I	A	L	I	L	A	H	M	E	A	P	N	A	A	E	T	L	S	Y	F	P	D	E	M	K	A	E	I	S	I	R	M	A	N	L	G	E	I	S	P	Q	V	V	K	R	V	S	T	V	L	E	N	K	L	E
Template Known Secondary structure					G	G	G	G	G	S										T	T	S											T	S										T	T	S														T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	N	L	K	R	S	K	M	G	G	V	R	T	A	A	E	I	I	N	L	M	K	T	Q	Q	E	E	A	V	I	T	A	V	R	E	F	D	G	E	L	A	Q	K	I	I	D	E	M	F	L	F	E	N	L	V	D	V	D	D	R	S	I	Q	R	L	L	Q	E	V	D	S	E	S	L	L	I	A	L	K
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence		S	L	T	I	.	.	.	E	V	G	G	L	R	A	V	A	E	I	F	N	R	L	G	Q	K	S	A	K	T	T	L	A	R	I	E	S	V	D	N	K	L	A	G	A	I	K	E	M	M	F	T	F	E	D	I	V	K	L	D	N	F	A	I	R	E	I	L	K	V	A	D	K	K	D	L	S	L	A	L	K
Template Known Secondary structure		T				.	.	.				S										T	S														T	T										T	T	S			G	G	G	G	G	G	S												S									T	T
Template Predicted Secondary structure						.	.	.
Template SS confidence
		197	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	E	Q	P	L	R	E	K	F	L	R	N	M	S	Q	R	A	A	D	I	L	R	D	D	L	A	N	R	G	P	V	R	L	S	Q	V	E	N	E	Q	K	A	I	L	L	I	V	R	R	L	A	E	T	G	E	M	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	T	K	D	L	T	D	K	F	L	N	N	M	S	S	R	A	A	E	Q	F	V	E	E	M	Q	Y	L	G	A	V	K	I	K	D	V	D	V	A	Q	R	K	I	I	E	I	V	Q	S	L	Q	E	K	G	V	I	Q
Template Known Secondary structure		T	S										T	T	S															T		S																							T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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