Job Description P0ABZ1 Confidence 100.00% Date Thu Jan 5 11:16:43 GMT 2012 Rank 1 Aligned Residues 319 % Identity 28% Template c3hjlA_ PDB info PDB header:proton transport Chain: A: PDB Molecule:flagellar motor switch protein flig; PDBTitle: the structure of full-length flig from aquifex aeolicus Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	L	T	G	T	D	K	S	V	I	L	L	M	T	I	G	E	D	R	A	A	E	V	F	K	H	L	S	Q	R	E	V	Q	T	L	S	A	A	M	A	N	V	T	Q	I	S	N	K	Q	L	T	D	V	L	A	E	F	E	Q	E	A	E	Q	F	A	A	L	N	I	N	A	N	D	Y	L	R	S	V	L
Query Conservation
Alig confidence																																																																														.
Template Conservation																																																																														.
Template Sequence		S	A	L	S	K	A	Q	K	A	A	V	L	L	L	S	L	P	E	E	V	S	M	N	I	V	K	E	L	S	E	E	E	L	Q	K	L	F	A	L	A	K	D	L	E	S	V	P	E	E	E	I	E	N	I	A	E	E	L	L	D	E	I	K	K	A	G	I	K	I	K	K	P	E	E	F	I	.	E	N	I
Template Known Secondary structure																	S												S														T																							T	T				S							.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	A	L	G	E	E	R	A	A	S	L	L	E	D	I	L	E	T	R	D	T	A	S	G	I	E	T	L	N	F	M	E	P	Q	S	A	A	D	L	I	R	D	E	H	P	Q	I	I	A	T	I	L	V	H	L	K	R	A	Q	A	A	D	I	L	A	L	F	D	E	R	L	R	H	D	V	M	L	R	I
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		K	K	V	I	P	P	T	L	A	E	K	F	R	G	I	L	.	E	L	G	D	A	E	K	I	L	K	E	I	E	K	V	D	S	R	I	L	A	S	L	L	K	N	E	H	P	Q	T	I	A	L	F	L	S	Q	L	S	P	K	K	S	A	E	I	I	Q	N	L	P	E	E	L	K	K	E	V	V	K	R	I
Template Known Secondary structure					S													.														T	S										T	T	S										T	T	S											T	S
Template Predicted Secondary structure																		.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		A	T	F	G	G	V	Q	P	A	A	L	A	E	L	T	E	V	L	N	G	L	L	D	G	Q	N	L	.	K	R	S	K	M	G	G	V	R	T	A	A	E	I	I	N	L	M	K	T	Q	Q	E	E	A	V	I	T	A	V	R	E	F	D	G	E	L	A	Q	K	I	I	D	E	M	F	L	F	E	N	L	V
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		A	T	L	E	N	V	N	V	Q	Y	V	K	E	L	A	Q	I	L	L	E	E	I	S	S	L	G	A	K	E	A	L	K	L	E	G	T	A	V	A	A	E	L	L	N	T	L	D	K	E	T	R	E	L	I	L	Q	S	I	G	Q	E	D	P	L	L	E	E	R	I	R	E	K	M	F	T	F	E	D	I	R
Template Known Secondary structure					S																										S																S																												S		G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	D	D	R	S	I	Q	R	L	L	Q	E	V	D	S	E	S	L	L	I	A	L	K	G	A	E	Q	P	L	R	E	K	F	L	R	N	M	S	Q	R	A	A	D	I	L	R	D	D	L	A	N	R	G	P	V	R	L	S	Q	V	E	N	E	Q	K	A	I	L	L	I	V	R	R	L	A	E	T	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	S	D	R	D	I	I	E	I	L	K	V	V	D	K	N	T	L	M	I	A	L	L	G	A	P	E	D	I	K	Q	K	F	L	S	N	M	S	K	R	A	A	K	L	F	L	E	D	M	E	A	L	G	P	V	K	K	S	E	I	E	K	A	Q	R	Q	V	V	N	I	I	R	K	M	I	D	E	G	K
Template Known Secondary structure		G	S										T	T	S											T	S										T	T	S															T		S																						T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		321	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		324	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions