Job Description P0ABZ1 Confidence 17.38% Date Thu Jan 5 11:16:43 GMT 2012 Rank 45 Aligned Residues 140 % Identity 19% Template c2ihmA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	A	A	D	I	L	A	L	F	D	E	R	L	R	H	D	V	M	L	R	I	A	T	F	G	G	V	Q	P	A	A	L	A	E	L	T	E	V	L	N	G	L	L	D	G	Q	N	L	K	R	S	K	M	G	G	V	R	T	A	A	E	I	I	N	L	M	K	T	Q	Q	E	E	A	V	I	T	A	V	R
Query Conservation
Alig confidence																			.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	R	A	A	S	V	L	K	S	L	P	C	P	V	A	S	L	.	.	S	Q	L	H	G	L	P	Y	F	G	E	H	S	T	R	V	I	Q	E	L	L	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	C	E	E	V	K	Q	V	R	C	S	E	R	Y	Q	T	M	K	L	F	T	Q	V	F
Template Known Secondary structure												S	S				S	G	.	.	G	G	G	T	T		T	T																.	.	.	.	.	.	.	.	.	.	.	.	.	S											S											T	S	T
Template Predicted Secondary structure																			.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.														220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		E	F	D	G	E	L	A	Q	K	I	I	D	E	.	M	F	L	F	E	N	L	V	D	V	D	D	R	S	I	Q	R	L	L	Q	E	V	D	S	E	S	L	L	I	A	L	K	G	A	E	Q	P	L	R	E	K	F	L	R	N	M	S	Q	R	A	A	D	I	L	R	D	D	L	A	N	R	G	P	V	R	L
Query Conservation															.
Alig confidence															.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	G	V	K	T	A	N	R	W	Y	Q	E	G	L	R	T	L	D	E	L	R	E	Q	P	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	Q	Q	Q	K	A	G	L	Q	Y	Y	Q	D	L	S	T	P	V	R	R
Template Known Secondary structure		T												T	T			S						T			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T						S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.																																	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	V	E	N	E	Q	K	A	I	L	L	I	V	R	R	L	A	E	T	G	E	M	V	I	G	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	A	E	A	L	Q	Q	L	I	E	A	A	V	R	Q	T	L	P	G	A	T	V	T	L	T	G	G
Template Known Secondary structure																	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions