Job Description P39165 Confidence 61.45% Date Thu Jan 5 11:58:19 GMT 2012 Rank 37 Aligned Residues 193 % Identity 12% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.					.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		W	G	N	A	S	V	D	V	K	V	D	N	E	G	H	F	T	G	S	R	G	S	W	F	V	P	L	Q	D	N	D	R	Y	L	T	W	S	Q	L	G	L	T	Q	Q	D	N	G	L	V	S	N	V	G	.	.	.	.	V	G	Q	R	W	A	R	G	N	W	L	V	G	Y	N	T	F	Y	D	N	L	L	D
Query Conservation																																																							.	.	.	.
Alig confidence																																																							.	.	.	.
Template Conservation
Template Sequence		Y	T	Y	A	D	R	T	Y	P	G	D	G	G	G	K	V	K	G	L	H	V	G	G	Y	A	A	Y	V	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P
Template Known Secondary structure									B	T	T	T	B																		S	S	S	B																				S	S	S																				B					G
Template Predicted Secondary structure
Template SS confidence
		798	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		E	N	L	Q	R	A	G	F	G	A	E	A	W	G	E	Y	L	R	L	S	A	N	F	Y	Q	P	F	A	A	W	H	E	Q	T	A	.	T	Q	E	Q	R	M	A	R	G	Y	D	L	T	A	R	M	R	M	P	F	Y	Q	H	L	N	T	S	V	S	L	E	Q	Y	F	G	D	R	V	D	L	F	N	S	G
Query Conservation																																					.
Alig confidence					.	.	.	.	.	.	.	.												.													.
Template Conservation					.	.	.	.	.	.	.	.												.
Template Sequence		N	D	W	.	.	.	.	.	.	.	.	F	A	E	P	Q	A	E	V	M	L	W	.	R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S
Template Known Secondary structure		G	G		.	.	.	.	.	.	.	.												.										S	S	S																										T	T	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.												.
Template SS confidence
		878	.	880									.	.	.	.	.	.	.	.	.	890	.		.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		T	G	Y	H	N	P	V	A	L	S	L	G	L	N	Y	.	.	T	P	V	P	L	V	T	V	T	A	Q	H	K	Q	G	E	S	G	E	N	Q	N	N	L	G	L	N	L	N	Y	R	F
Query Conservation																	.	.
Alig confidence																	.	.
Template Conservation
Template Sequence		T	G	R	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A	G	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure					B														G	G	G	B												S	S													B
Template Predicted Secondary structure
Template SS confidence
		949	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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