Job Description P39165 Confidence 61.47% Date Thu Jan 5 11:58:19 GMT 2012 Rank 36 Aligned Residues 147 % Identity 13% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

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		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.										180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																																									.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.																																									.	.	.	.
Query Sequence		V	G	V	G	Q	R	W	A	R	G	N	W	L	V	G	Y	N	T	F	Y	.	.	.	.	.	.	.	.	.	D	N	L	L	D	E	N	L	Q	R	A	G	F	G	A	E	A	W	G	E	Y	L	R	L	S	A	N	F	Y	Q	P	F	A	A	W	H	E	Q	T	A	.	.	.	.	T	Q	E	Q	R	M	A
Query Conservation																						.	.	.	.	.	.	.	.	.																																									.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template Conservation
Template Sequence		V	G	Y	T	X	A	Y	E	F	D	G	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	Q	D	R	D	G	N	G	D	R	A	E	S	R	A	V	G	A	K	Y	D	A	N	N	V	Y	L	A	A	V	Y	A	E	T	R	N	X	S	I	V	E	N	T	V	T	D	T	V	E	X	A	N	K	T
Template Known Secondary structure											T	T														S	T	T	S	S	S	S	S			S														T	T											S	S							T	T	T							S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		R	G	Y	D	L	T	A	R	M	R	M	P	F	Y	Q	H	L	N	T	S	V	S	L	E	Q	Y	F	G	D	R	V	D	L	F	N	S	G	T	G	Y	H	N	P	V	A	L	S	L	G	L	N	Y	T	P	V	P	L	V	T	V	T	A	Q	H	K	Q	G	E	S	G	E	N	Q	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence														.	.																													.	.																														.	.	.	.	.	.	.
Template Conservation														.	.																													.	.
Template Sequence		Q	N	L	E	V	V	A	Q	Y	Q	F	D	.	.	F	G	L	R	P	A	I	S	Y	V	Q	S	K	G	K	Q	L	N	G	A	G	G	S	A	D	L	A	K	.	.	Y	I	Q	A	G	A	T	Y	Y	F	N	K	N	X	N	V	W	V	D	Y	R	F	N	L	L	D	E	N	D	Y	S	S	S	Y	V	G
Template Known Secondary structure													T	.	.	T	S														S		T	T	T	T	S							.	.												S	S																S	S		T	T	T	T
Template Predicted Secondary structure														.	.																													.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
				300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	N	N	L	G	L	N	L	N	Y	R	F
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		T	D	D	Q	A	A	V	G	I	T	Y	Q	F
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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