Job Description P39165 Confidence 25.94% Date Thu Jan 5 11:58:19 GMT 2012 Rank 96 Aligned Residues 146 % Identity 15% Template c3a2rX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis Resolution 2.30 Å

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		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query Sequence		V	G	V	G	Q	R	W	A	R	G	N	W	L	V	G	Y	N	T	F	Y	D	N	L	L	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	Q	R	A	G	F	G	A	E	A	W	G	E	Y	L	R	L	S	A	N	F	Y	Q	P	F	A	A	W	H	E	Q	T	A	.	T
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation
Template Sequence		Y	H	A	G	L	K	Y	E	N	A	G	F	F	G	Q	Y	A	G	S	F	A	K	Y	A	D	L	N	T	D	A	E	R	V	A	V	N	T	A	N	A	H	P	V	K	D	Y	Q	V	H	R	V	V	A	G	Y	D	A	N	D	L	Y	V	S	V	A	G	Q	Y	E	A	A	K	N	N	E	V	G	S	I	K
Template Known Secondary structure											T	T																	T	T	S		B			T	T		T	T																			T	T																S	S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.						.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.
Query Sequence		Q	E	Q	R	M	A	R	G	Y	D	L	T	A	R	M	R	M	P	F	Y	Q	H	L	N	T	S	V	S	L	E	Q	Y	F	G	D	R	V	D	L	F	N	S	G	T	G	Y	H	N	P	V	A	L	S	L	G	L	N	Y	T	P	V	P	L	V	T	V	T	A	Q	H	K	.	.	.	.	.	Q	G	E	S
Query Conservation																																																																									.	.	.	.	.
Alig confidence																					.	.	.	.	.																																																.	.	.	.	.
Template Conservation																					.	.	.	.	.
Template Sequence		G	K	K	H	E	Q	T	Q	V	A	A	T	A	A	Y	R	F	G	N	.	.	.	.	.	V	T	P	R	V	S	Y	A	H	G	F	K	A	K	V	N	G	V	K	D	A	N	Y	Q	Y	D	Q	V	I	V	G	A	D	Y	D	F	S	K	R	T	S	A	L	V	S	A	G	W	L	K	Q	G	K	G	A	G
Template Known Secondary structure		T																B	T	T	.	.	.	.	.																T	T				G	G	G													S	S	S	S													S	S	T	T	S
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	N	Q	N	N	L	G	L	N	L	N	Y	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	E	Q	T	A	S	M	V	G	L	R	H	K	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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