Job Description P39165 Confidence 41.95% Date Thu Jan 5 11:58:19 GMT 2012 Rank 61 Aligned Residues 151 % Identity 11% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure									.																															.																								.	.
Query SS confidence									.																															.																								.	.
Query Sequence		V	G	V	G	Q	R	W	.	A	R	G	N	W	L	V	G	Y	N	T	F	Y	D	N	L	L	D	E	N	L	Q	R	A	G	F	G	A	E	A	.	W	G	E	Y	L	R	L	S	A	N	F	Y	Q	P	F	A	A	W	H	E	Q	T	A	.	.	T	Q	E	Q	R	M	A	R	G	Y	D	L	T	A	R	M
Query Conservation									.																															.																								.	.
Alig confidence									.																															.																								.	.
Template Conservation
Template Sequence		V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y
Template Known Secondary structure										S	S	S	S													T	T															S	S	S													S	S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.					.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																																.	.	.	.
Query SS confidence																																																																.	.	.	.
Query Sequence		R	M	P	F	Y	Q	H	L	N	T	S	V	S	L	E	Q	Y	F	G	D	R	V	D	L	F	N	S	G	T	G	Y	H	N	P	V	A	L	S	L	G	L	N	Y	T	P	V	P	L	V	T	V	T	A	Q	H	K	Q	G	E	S	G	E	.	.	.	.	N	Q	N	N	L	G	L	N	L	N	Y	R	F
Query Conservation																																																																.	.	.	.
Alig confidence																																																																.	.	.	.
Template Conservation
Template Sequence		H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y	H	M	T	P	D	I	T	P	Y	I	E	Y	D	Y	L	D	R	Q	G	V	Y	N	G	R	D	N	L	S	E	N	S	Y	R	I	G	V	S	F	K	L
Template Known Secondary structure				S	S	S													S	S	S				T	T	S	S	S													S	B	T	T												S					T	T
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions