Return to main results Retrieve Phyre Job Id

Job DescriptionP39165
Confidence25.14%DateThu Jan 5 11:58:19 GMT 2012
Rank99Aligned Residues86
% Identity19%Templatec2oxgE_
PDB info PDB header:transport proteinChain: E: PDB Molecule:soxz protein; PDBTitle: the soxyz complex of paracoccus pantotrophus
Resolution1.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   354.....360.........370.........380. ........390.........400.........410.........420....
Predicted Secondary structure 












.........






















Query SS confidence 



























. . . . . . . . .










































Query Sequence  TVFLATPPWDLKPGETVPLKLQIRSRYG. . . . . . . . . IRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEGASNH
Query Conservation   
 
      
  

   
   
 


 .........
  
 
  
   
  

 
         
 

 
       
 
Alig confidence 






...

















.........
























......











Template Conservation   
  
  ...
  
  
 
   
 


 

  


  
  
     
  
        

 
......
   
       
Template Sequence  RVKVPSS. . . AKAGETVTVKALISHKMESGQLIPRSIINRFTCELNGVNVVDVAIDPAVSTN. . . . . . PYFEFDAKVDAA
Template Known Secondary structure 

SB...

TT




B






B
TT

TTS
SS......

SS
Template Predicted Secondary structure 


...
























......




Template SS confidence 















































































   7..10... ......20.........30.........40.........50.........60..... ....70.......
 
   425....430.........440.........
Predicted Secondary structure 




Query SS confidence 
























Query Sequence  WRLSVVVEDNQGQRVSSNEITLTLV
Query Conservation 
 

  
 
 


 
 
    
 

Alig confidence 












.










Template Conservation 
 
 
   

 
 .       
 

Template Sequence  GEFKFTWYDDDGS. VYEDVKPIAVA
Template Known Secondary structure  TTS
.B

Template Predicted Secondary structure 




.
Template SS confidence 
























   85....90....... ..100........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions