Job Description P39165 Confidence 30.12% Date Thu Jan 5 11:58:19 GMT 2012 Rank 87 Aligned Residues 102 % Identity 15% Template c1gzpA_ PDB info PDB header:glycoprotein Chain: A: PDB Molecule:t-cell surface glycoprotein cd1b; PDBTitle: cd1b in complex with gm2 ganglioside Resolution 2.8 Å

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		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.				370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure																											.	.	.															.
Query SS confidence																											.	.	.															.
Query Sequence		L	E	Y	R	Q	R	K	T	L	T	V	F	L	A	T	P	P	W	D	L	K	P	G	E	T	.	.	.	V	P	L	K	L	Q	I	R	S	R	Y	G	I	R	.	Q	L	I	W	Q	G	D	T	Q	I	L	S	L	T	P	G	A	Q	A	N	S	A	E	G	W	T	L	I	M	P	D	W	Q	N	G	E	G
Query Conservation																											.	.	.															.
Alig confidence																											.	.	.															.									.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Sequence		L	N	A	G	K	A	D	L	Q	R	Q	V	K	P	E	A	W	L	S	S	G	P	S	P	G	P	G	R	L	Q	L	V	C	H	V	S	G	F	Y	P	K	P	V	W	V	M	W	M	R	G	E	.	.	.	.	.	.	.	.	.	Q	E	Q	Q	G	T	Q	L	G	D	I	L	P	.	.	.	.	.	.	N
Template Known Secondary structure					T					T			B												S	S	T	T										S		B	S	S									T	T	.	.	.	.	.	.	.	.	.				T	T									.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.										.	.	.	.	.	230	.	.	.	.	.	.	.							.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	N	H	W	R	L	S	V	V	V	E	D	N	Q	G	Q	R	V	S	S	N	E	I	T	L	T	L	V	E	P	F	D	A	L	S	N	D	E	L	R	W	E	P
Query Conservation
Alig confidence																			.	.	.
Template Conservation																			.	.	.
Template Sequence		A	N	W	T	W	Y	L	R	A	T	L	D	V	A	D	G	E	.	.	.	A	A	G	L	S	C	R	V	K	H	S	S	L	E	G	Q	D	I	I	L	Y	W	G	P
Template Known Secondary structure		T	T	T												G	G	G	.	.	.	G	T	T								T	T	T	T	T
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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