Job Description P39165 Confidence 27.62% Date Thu Jan 5 11:58:19 GMT 2012 Rank 92 Aligned Residues 100 % Identity 16% Template c1bqsA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:protein (mucosal addressin cell adhesion PDBTitle: the crystal structure of mucosal addressin cell adhesion2 molecule-1 (madcam-1) Resolution 2.20 Å

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		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	V	F	L	A	T	P	P	W	D	L	K	P	G	E	T	V	P	L	K	L	Q	I	R	S	R	Y	G	I	R	Q	L	I	W	Q	G	D	T	Q	I	L	S	L	T	P	G	A	Q	A	N	S	A	E	G	W	T	L	I	M	P	D	W	Q	N	G	E	G	A	S	N	H	W	R	L	S	V	V	V	E
Query Conservation
Alig confidence																																												.	.	.	.																.	.	.	.
Template Conservation																																												.	.	.	.																.	.	.	.
Template Sequence		L	Q	V	E	P	P	E	P	V	V	A	V	A	L	G	A	S	R	Q	L	T	C	R	L	A	C	A	D	R	G	A	S	V	Q	W	R	G	L	D	T	S	L	.	.	.	.	G	A	V	Q	S	D	T	G	R	S	V	L	T	V	R	.	.	.	.	N	A	S	L	S	A	A	G	T	R	V	C	V	G	S
Template Known Secondary structure						S			S						T	T												S	S	S								S	S			S	S	.	.	.	.						S	S	S	S							.	.	.	.	S			G	G	G
Template Predicted Secondary structure																																												.	.	.	.																.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	Q	G	Q	R	V	S	S	N	E	I	T	L	T	L	V	E	P	F	D	A	L	S	N	D	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	G	G	R	T	F	Q	H	T	V	Q	L	L	V	Y	A	F	P	N	Q	L	T	V	S	P	A	A	L
Template Known Secondary structure			T	T													B			S						S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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