Job Description P0ABR5 Confidence 100.00% Date Thu Jan 5 11:16:07 GMT 2012 Rank 2 Aligned Residues 439 % Identity 36% Template c2hmnA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit; PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene. Resolution 1.70 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	Y	Q	L	I	D	T	Q	N	G	R	V	T	P	R	I	Y	T	D	P	D	I	Y	Q	L	E	L	E	R	I	F	G	R	C	W	L	F	L	A	H	E	S	Q	I	P	K	P	G	D	F	F	N	T	Y	M	G	E	D	A	V	V	V	V	R	Q	K	D	G	S	I	K	A	F	L	N	Q	C	R	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	N	K	I	L	V	S	E	S	G	L	S	Q	K	H	L	I	H	G	D	E	E	L	F	Q	H	E	L	K	T	I	F	A	R	N	W	L	F	L	T	H	D	S	L	I	P	A	P	G	D	Y	V	T	A	K	M	G	I	D	E	V	I	V	S	R	Q	N	D	G	S	I	R	A	F	L	N	V	C	R	H
Template Known Secondary structure		T	T			S	B		G	G	G					G	G	G	G	T												T	T	T	T	S							G	G	G	S		S	T	T								T	T									T	T	S							S	B		T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	M	R	V	S	Y	A	D	C	G	N	T	R	A	F	T	C	P	Y	H	G	W	S	Y	G	I	N	G	E	L	I	D	V	P	L	E	P	R	A	Y	P	Q	G	L	C	K	S	H	W	G	L	N	E	V	P	C	V	E	S	Y	K	G	L	I	F	G	N	W	D	T	S	A	P	G	L	R	D	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	K	T	L	V	S	V	E	A	G	N	A	K	G	F	V	C	S	Y	H	G	W	G	F	G	S	N	G	E	L	Q	S	V	P	F	E	K	D	L	Y	G	E	S	L	N	K	K	C	L	G	L	K	E	V	A	R	V	E	S	F	H	G	F	I	Y	G	C	F	D	Q	E	A	P	P	L	M	D	Y	L
Template Known Secondary structure		T			B	S			S	S					S					T	T	T						T	T	S						T	T						T	T				G	G	G		S			B		S						T	T						S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	I	A	W	Y	L	D	G	M	L	D	R	R	E	G	G	T	E	I	V	G	G	V	Q	K	W	V	I	N	C	N	W	K	F	P	A	E	Q	F	A	S	D	Q	Y	H	A	L	F	S	H	A	S	A	V	Q	V	L	G	A	K	D	D	G	S	D	K	R	L	G	D	G	Q	T	A	R	P	V	W	E
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		G	D	A	A	W	Y	L	E	P	M	F	K	H	.	S	G	G	L	E	L	V	G	P	P	G	K	V	V	I	K	A	N	W	K	A	P	A	E	N	F	V	G	D	A	Y	H	V	G	W	T	H	A	S	S	L	R	S	G	E	S	I	F	S	S	L	A	G	N	A	A	L	P	P	E	G	A	G	L	Q	M
Template Known Secondary structure		T	T										T	T	.	T	S														S	S		T												T	T					T								T		T	T	G	G	G	G	G	G	S					T	T	S
Template Predicted Secondary structure															.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		T	A	K	D	A	L	Q	F	G	Q	D	G	H	G	S	G	F	F	F	T	E	K	P	D	A	N	V	W	V	D	G	A	V	S	S	Y	Y	R	E	T	Y	A	E	A	E	Q	R	L	G	E	V	R	A	L	R	.	.	L	A	G	H	N	N	I	F	P	T	L	S	W	L	N	G	T	A	T	L	R	V	W
Query Conservation																																																									.	.
Alig confidence																	.	.	.	.	.	.																																			.	.
Template Conservation																	.	.	.	.	.	.
Template Sequence		T	S	K	Y	G	S	G	M	G	V	L	W	D	G	Y	.	.	.	.	.	.	S	G	V	H	S	A	D	L	V	P	E	L	M	A	F	G	G	A	K	Q	E	R	L	N	K	E	I	G	D	V	R	A	R	I	Y	R	S	H	L	N	C	T	V	F	P	N	N	S	M	L	T	C	S	G	V	F	K	V	W
Template Known Secondary structure				T	T	S							T	T		T	.	.	.	.	.	.	T	T	T			T	T	T																												T	S							T	T	T					T	T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.							.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	R	G	P	D	Q	V	E	V	W	A	F	C	I	T	D	K	A	A	S	D	E	V	K	A	A	F	E	N	S	A	T	R	A	F	G	P	A	G	F	L	E	Q	D	D	S	E	N	W	C	E	I	Q	K	L	L	K	G	H	R	A	R	N	S	K	L	C	L	E	M	G	L	G	Q	E	K	R	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P	I	D	A	N	T	T	E	V	W	T	Y	A	I	V	E	K	D	M	P	E	D	L	K	R	R	L	A	D	S	V	Q	R	T	V	G	P	A	G	F	W	E	S	D	D	N	D	N	M	E	T	A	S	Q	N	G	K	K	Y	Q	S	R	D	S	D	L	L	S	N	L	G	F	G	E	D	V	Y	G	D
Template Known Secondary structure						T	T												T	T	S																	S	T	T																		T	T	S	T	T	T	T	T							T	T	T	T					S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		406	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		D	G	I	P	G	I	T	N	Y	.	I	F	S	E	T	A	A	R	G	M	Y	Q	R	W	A	D	L	L	S	S	E	S	W	Q	E	V	L	D	K	T	A	A	Y	Q	Q	E	V	M	K
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		A	V	Y	P	G	V	V	G	K	S	A	I	G	E	T	S	Y	R	G	F	Y	R	A	Y	Q	A	H	V	S	S	S	N	W	A	E	F	E	H	A	S	S	T	W	H	T	E	L	T	K
Template Known Secondary structure		S	S	S		S				S	S	S	S		S															T		S	S								T	T	T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.