Job Description P0ABR5 Confidence 100.00% Date Thu Jan 5 11:16:07 GMT 2012 Rank 5 Aligned Residues 409 % Identity 39% Template c2b1xE_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:naphthalene dioxygenase large subunit; PDBTitle: crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp. Resolution 2.00 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	Q	N	G	R	V	T	P	R	I	Y	T	D	P	D	I	Y	Q	L	E	L	E	R	I	F	G	R	C	W	L	F	L	A	H	E	S	Q	I	P	K	P	G	D	F	F	N	T	Y	M	G	E	D	A	V	V	V	V	R	Q	K	D	G	S	I	K	A	F	L	N	Q	C	R	H	R	A	M	R	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	S	D	W	T	V	P	A	A	I	I	N	D	P	E	V	H	D	V	E	R	E	R	I	F	G	H	A	W	V	F	L	A	H	E	S	E	I	P	E	R	G	D	Y	V	V	R	Y	I	S	E	D	Q	F	I	V	C	R	D	E	G	G	E	I	R	G	H	L	N	A	C	R	H	R	G	M	Q	V	C
Template Known Secondary structure		T	T	T	T					G	G	G	S	S												T	T	T	T	S							G	G	G	S		S	T	T								T	T									T	T	S							S	S		T	T	T				S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	D	C	G	N	T	R	A	F	T	C	P	Y	H	G	W	S	Y	G	I	N	G	E	L	I	D	V	P	L	E	P	R	A	Y	P	Q	G	L	C	K	S	H	W	G	L	N	E	V	P	C	V	E	S	Y	K	G	L	I	F	G	N	W	D	T	S	A	P	G	L	R	D	Y	L	G	D	I	A	W	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	E	M	G	N	T	S	H	F	R	C	P	Y	H	G	W	T	Y	S	N	T	G	S	L	V	G	V	P	A	G	K	D	A	Y	G	N	Q	L	K	K	S	D	W	N	L	R	P	M	P	N	L	A	S	Y	K	G	L	I	F	G	S	L	D	P	H	A	D	S	L	E	D	Y	L	G	D	L	K	F	Y
Template Known Secondary structure			S	S					S					T	T	T						T	T	S						T	T	T	T	T	T	T	T	T				G	G	G	S	S			B		S						T	T						S		T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	G	M	L	D	R	R	E	G	G	T	E	I	V	G	G	V	Q	K	W	V	I	N	C	N	W	K	F	P	A	E	Q	F	A	S	D	Q	Y	H	A	L	F	S	H	A	S	A	V	Q	V	L	G	A	K	D	D	G	S	D	K	R	L	G	D	G	Q	T	A	R	P	V	W	E	T	A	K	D	A	L
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	I	V	L	D	R	S	D	A	G	L	Q	V	V	G	A	P	Q	R	W	V	I	D	A	N	W	K	L	G	A	D	N	F	V	G	D	A	Y	H	T	M	M	T	H	R	S	M	V	E	L	G	L	A	P	P	D	P	Q	F	A	L	Y	G	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	S	T	T						S								S	S		T												T	T					T							T	S	S				T	T	G	G	G	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.													.	.	.	320	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	F	G	Q	D	G	H	G	S	G	F	F	F	T	E	K	P	D	A	N	V	W	V	D	G	A	V	S	S	Y	Y	R	E	T	Y	A	E	A	E	Q	R	L	G	E	V	R	A	L	R	L	A	G	H	N	N	I	F	P	T	L	S	W	L	.	.	.	.	.	.	.	.	.	.	.	.	N	G	T	A	T
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	H	T	G	H	G	H	G	L	G	I	I	G	P	P	P	G	M	P	L	P	E	F	M	G	L	P	E	N	I	V	E	E	L	E	R	R	L	T	P	E	Q	V	E	I	F	R	P	T	A	F	I	H	G	T	V	F	P	N	L	S	I	G	N	F	L	M	G	K	D	H	L	S	A	P	T	A	F	L	T
Template Known Secondary structure					S	T	T										T	T					S	G	G	G													S									T	T		S							T	T	T										S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	V	W	H	P	R	G	P	D	Q	V	E	V	W	A	F	C	I	T	D	K	A	A	S	D	E	V	K	A	A	F	E	N	S	A	T	R	A	F	G	P	A	G	F	L	E	Q	D	D	S	E	N	W	C	E	I	Q	K	L	L	K	G	H	R	A	R	N	S	K	L	C	L	E	M	G	L	G	Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	L	W	H	P	L	G	P	D	K	M	E	V	M	S	F	F	L	V	E	K	D	A	P	D	W	F	K	D	E	S	Y	K	S	Y	L	R	T	F	G	I	S	G	G	F	E	Q	D	D	A	E	N	W	R	S	I	T	R	V	M	G	G	Q	F	A	K	T	G	E	L	N	Y	Q	M	G	R	G	V	L
Template Known Secondary structure										T	T												T	T	S														T	T	S	S	T	T		T	T															T	T	S	T	T	G	G	G	S						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		402	.	.		.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure					.											.
Query SS confidence					.											.
Query Sequence		K	R	R	.	D	D	G	I	P	G	I	T	N	Y	.	I	F	S	E	T	A	A	R	G	M	Y	Q	R	W	A	D	L	L	S	S	E	S
Query Conservation					.											.
Alig confidence					.											.
Template Conservation
Template Sequence		E	P	D	P	N	W	T	G	P	G	E	A	Y	P	L	D	Y	A	E	A	N	Q	R	N	F	L	E	Y	W	M	Q	L	M	L	A	E	S
Template Known Secondary structure					T	T			S	S	S				S	S	S																		T		S	S
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.