Job Description P0ABR5 Confidence 100.00% Date Thu Jan 5 11:16:07 GMT 2012 Rank 4 Aligned Residues 417 % Identity 48% Template c1uljA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:biphenyl dioxygenase large subunit; PDBTitle: biphenyl dioxygenase (bpha1a2) in complex with the substrate Resolution 2.60 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	L	N	I	Y	Q	L	I	D	T	Q	N	G	R	V	T	P	R	I	Y	T	D	P	D	I	Y	Q	L	E	L	E	R	I	F	G	R	C	W	L	F	L	A	H	E	S	Q	I	P	K	P	G	D	F	F	N	T	Y	M	G	E	D	A	V	V	V	V	R	Q	K	D	G	S	I	K	A	F	L	N	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	A	D	I	A	E	L	V	D	E	R	T	G	R	L	D	P	R	I	Y	T	D	E	A	L	Y	E	Q	E	L	E	R	I	F	G	R	S	W	L	L	M	G	H	E	T	Q	I	P	K	A	G	D	F	M	T	N	Y	M	G	E	D	P	V	M	V	V	R	Q	K	N	G	E	I	R	V	F	L	N	Q
Template Known Secondary structure								T	T			T	T	T	T				G	G	G	G	T												T	T	T	T	S							G	G	G	S		S	T	T								T	T									T	T	S							S
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	R	H	R	A	M	R	V	S	Y	A	D	C	G	N	T	R	A	F	T	C	P	Y	H	G	W	S	Y	G	I	N	G	E	L	I	D	V	P	L	E	P	R	A	Y	P	Q	G	L	C	K	S	H	W	G	L	N	E	V	P	C	V	E	S	Y	K	G	L	I	F	G	N	W	D	T	S	A	P	G	L	R
Query Conservation
Alig confidence																																														.														.
Template Conservation																																														.														.
Template Sequence		C	R	H	R	G	M	R	I	C	R	A	D	G	G	N	A	K	S	F	T	C	S	Y	H	G	W	A	Y	D	T	G	G	N	L	V	S	V	P	F	E	E	Q	A	F	.	P	G	L	R	K	E	D	W	G	P	L	Q	A	.	R	V	E	T	Y	K	G	L	I	F	A	N	W	D	A	D	A	P	D	L	D
Template Known Secondary structure			T	T	T				S			S	S					S					T	T	T						T	T							T	T						.	S	S			G	G	G	S	S					.						T	T								T	T	S
Template Predicted Secondary structure																																														.														.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	L	G	D	I	A	W	Y	L	D	G	M	L	D	R	R	E	G	G	T	E	I	V	G	G	V	Q	K	W	V	I	N	C	N	W	K	F	P	A	E	Q	F	A	S	D	Q	Y	H	A	L	F	S	H	A	S	A	V	Q	V	L	G	A	K	D	D	G	S	D	K	R	L	G	D	G	Q	T	A	R	P
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Y	L	G	E	A	K	F	Y	M	D	H	M	L	D	R	T	E	A	G	T	E	A	I	P	G	I	Q	K	W	V	I	P	C	N	W	K	F	A	A	E	Q	F	C	S	D	M	Y	H	A	G	T	T	S	H	L	S	G	I	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Template Known Secondary structure					T	T											S	S	T	T						S									S												B					T	T	T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.																			.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.					.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		V	W	E	T	A	K	D	A	L	Q	F	G	Q	D	G	H	G	S	G	F	F	F	T	E	K	P	D	A	N	V	W	V	D	G	A	V	S	S	Y	Y	R	E	T	Y	A	E	A	E	Q	.	.	.	.	R	L	G	E	V	R	A	L	R	L	A	G	H	N	N	I	F	P	T	L	S	W	L	N	G	T	A
Query Conservation																																																			.	.	.	.
Alig confidence																																																			.	.	.	.
Template Conservation
Template Sequence		L	P	P	T	E	G	I	Q	Y	R	A	T	W	G	G	H	G	S	G	F	Y	I	G	D	P	N	L	L	L	A	I	M	G	P	K	V	T	E	Y	W	T	Q	G	P	A	A	E	K	A	S	E	R	L	G	S	T	E	R	G	Q	Q	L	M	A	Q	H	M	T	I	F	P	T	C	S	F	L	P	G	I	N
Template Known Secondary structure													S	S	S	S								S		T																	S											T	T							S									T	T	T					T	T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	R	V	W	H	P	R	G	P	D	Q	V	E	V	W	A	F	C	I	T	D	K	A	A	S	D	E	V	K	A	A	F	E	N	S	A	T	R	A	F	G	P	A	G	F	L	E	Q	D	D	S	E	N	W	C	E	I	Q	K	L	L	K	G	H	R	A	R	N	S	K	L	C	L	E	M	G	L	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	R	A	W	H	P	R	G	P	N	E	I	E	V	W	A	F	T	V	V	D	A	D	A	P	E	E	M	K	E	E	Y	R	Q	Q	T	L	R	T	F	S	A	G	G	V	F	E	Q	D	D	G	E	N	W	V	E	I	Q	Q	V	L	R	G	H	K	A	R	S	R	P	F	N	A	E	M	G	L	G	Q
Template Known Secondary structure									S	S	T	T												T	T	S																S	S	T	T	S	T	T															T	T	S	T	G	G	G	S	S						T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	R	R	D	D	G	I	P	G	I	T	N	Y	I	F	S	E	T	A	A	R	G	M	Y	Q	R	W	A	D	L	L	S	S	E	S	W	Q	E	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	S	D	N	P	D	Y	P	G	T	I	S	Y	V	Y	S	E	E	A	A	R	G	L	Y	T	Q	W	V	R	M	M	T	S	P	D	W	A	A	L	D
Template Known Secondary structure				S			S	S	S		S					S	B		S															T		S	S
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.