Job Description P76254 Confidence 100.00% Date Thu Jan 5 12:21:16 GMT 2012 Rank 8 Aligned Residues 220 % Identity 20% Template c1umkA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-cytochrome b5 reductase; PDBTitle: the structure of human erythrocyte nadh-cytochrome b52 reductase Resolution 1.75 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		S	D	Y	Q	M	F	E	V	Q	V	S	Q	V	E	P	L	T	E	Q	V	K	R	F	T	L	V	A	T	D	G	K	P	L	P	A	F	T	G	G	S	H	V	I	V	Q	M	S	D	G	D	N	Q	Y	S	N	A	Y	S	L	L	S	S	P	H	D	T	S	C	Y	Q	I	A	V	R	L	E	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																																																														.	.	.	.
Template Conservation
Template Sequence		S	P	D	I	K	Y	P	L	R	L	I	D	R	E	I	I	S	H	D	T	R	R	F	R	F	A	L	P	S	P	Q	H	I	L	G	L	P	V	G	Q	H	I	Y	L	S	A	R	I	D	G	N	L	V	V	R	P	Y	T	P	I	S	S	D	D	D	K	G	F	V	D	L	V	I	K	V	Y	F	K	D	T
Template Known Secondary structure			T	T														S	S	S									S	S	T	T		B					T	T										T	T										S	S		T	T			S											S	S	S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
						78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	E	N	S	R	G	G	S	R	F	L	H	Q	Q	V	K	V	G	D	R	L	T	I	S	T	P	N	N	L	F	A	L	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	R	K	H	L	F	I	A	G	G	I	G	I	T	P	F	L	S	H	M	A	E	L	Q	H
Query Conservation		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.													.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		H	P	K	F	P	A	G	G	K	M	S	Q	Y	L	E	S	.	M	Q	I	G	D	T	I	E	F	R	G	P	S	G	L	L	V	Y	Q	G	K	G	K	F	A	I	R	P	D	K	K	S	N	P	I	I	R	T	V	K	S	V	G	M	I	A	G	G	T	G	I	T	P	M	L	Q	V	I	R	A	I	M	K
Template Known Secondary structure		B	T	T	B	T	T											.			T	T											S						T	T						S	S	T	T	S								S								G	G	G													T
Template Predicted Secondary structure																		.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		137	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180													.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.																														.	.														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.																														.	.														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	.	.	.	V	D	W	Q	L	H	Y	C	S	R	N	P	E	S	C	A	F	R	D	E	L	V	Q	H	P	Q	A	E	K	.	.	V	H	L	H	H	S	S	T	G	T	R	L	E	.	.	.	.	.	.	.	.	.	.	.	.	L	A	R	L	L	A	D	I	E	P	G	T	H	V	Y	T	C	G	P
Query Conservation				.	.	.																														.	.														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																														.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	D	D	H	T	V	C	H	L	L	F	A	N	Q	T	E	K	D	I	L	L	R	P	E	L	E	E	L	R	N	K	H	S	A	R	F	K	L	W	Y	T	L	D	R	A	P	E	A	W	D	Y	G	Q	G	F	V	N	E	E	M	I	R	D	H	L	P	P	P	E	E	E	P	L	V	L	M	C	G	P
Template Known Secondary structure			T	T												S	S	G	G	G		T	T												T	T	T								S	S			S	S		S	S			S	S										S			G	G	G								S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		E	A	L	I	E	A	.	V	R	S	E	A	A	R	L	D	I	A	A	D	T	L	H	F
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		P	P	M	I	Q	Y	A	C	L	P	N	L	D	H	V	G	H	P	T	E	R	C	F	V
Template Known Secondary structure								T	T								T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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