Job Description P76254 Confidence 100.00% Date Thu Jan 5 12:21:16 GMT 2012 Rank 4 Aligned Residues 238 % Identity 19% Template c1ep3B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions. Resolution 2.10 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	E	V	Q	V	S	Q	V	E	P	L	T	E	Q	V	K	R	F	T	L	V	A	T	D	G	K	P	L	P	A	F	T	G	G	S	H	V	I	V	Q	M	S	D	G	D	N	Q	Y	S	N	A	Y	S	L	L	S	S	P	H	D	T	S	C	Y	Q	I	A	V	R	L	E	E	N	S	R	G	G	S	R
Query Conservation
Alig confidence																														.	.																																															.
Template Conservation																														.	.																																															.
Template Sequence		Q	E	M	M	T	V	V	S	Q	R	E	V	A	Y	N	I	F	E	M	V	L	K	G	T	L	V	D	E	.	.	M	D	L	P	G	Q	F	L	H	L	A	V	P	N	G	A	M	L	L	R	R	P	I	S	I	S	S	W	D	K	R	A	K	T	C	T	I	L	Y	R	I	G	D	E	T	T	.	G	T	Y
Template Known Secondary structure															T	T								S	G	G	G	G	G	.	.			S	T	T								S		T	T			S											T	T	T	T											T	T	S	.
Template Predicted Secondary structure																														.	.																																															.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		F	L	H	Q	Q	V	K	V	G	D	R	L	T	I	S	T	P	N	N	L	F	A	L	I	P	S	.	.	A	R	K	H	L	F	I	A	G	G	I	G	I	T	P	F	L	S	H	M	A	E	L	Q	H	S	D	V	D	W	Q	L	H	Y	C	S	R	N	P	E	S	C	A	F	R	D	E	L	V	Q	H	P
Query Conservation																												.	.
Alig confidence																												.	.
Template Conservation
Template Sequence		K	L	S	K	L	E	S	G	A	K	V	D	V	M	G	P	L	G	N	G	F	P	V	A	E	V	T	S	T	D	K	I	L	I	I	G	G	G	I	G	V	P	P	L	Y	E	L	A	K	Q	L	E	K	T	G	C	Q	M	T	I	L	L	G	F	A	S	E	N	V	K	I	L	E	N	E	F	S	N	L	K
Template Known Secondary structure					T			T	T										S	B					T	T			T	T	S								G	G	G	S														T										S	S	G	G	G									T	S	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		164	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure					.																								.
Query SS confidence					.																								.
Query Sequence		Q	A	E	.	K	V	H	L	H	H	S	S	T	G	T	R	L	E	L	A	R	L	L	A	D	I	E	.	P	G	T	H	V	Y	T	C	G	P	E	A	L	I	E	A	V	R	S	E	A	A	R	L	D	I	A	A	D	T	L	H	F	E	Q	F	A	I	E	D	K	T	G	D	A	F	T	L	V	L	A	R
Query Conservation					.																								.
Alig confidence					.																								.																										.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	T	L	K	I	A	T	D	D	G	S	Y	G	T	K	G	H	V	G	M	L	M	N	E	I	D	F	E	V	D	A	L	Y	T	C	G	A	P	A	M	L	K	A	V	A	K	K	Y	D	Q	L	E	.	.	R	L	Y	I	S	M	E	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T								T	T		S	S	S			S											S			S						S												T	T	T		S	.	.	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	K	E	F	V	V	P	E	E	M	T	I	L	Q	V	I	E	N	N	K	A	A	K	V	E	C	L	C	R	E	G	V	C	G	T	C	E	T	A	I	L	E	G	E	A	D	H	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	A	C	G	I	G	A	C	Y	A	C	V	E	H	D	K	E	D	E	S	H	A	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	S	S	S	S		T	T					T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																												224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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