Job Description Q46822 Confidence 93.80% Date Thu Jan 5 12:34:47 GMT 2012 Rank 83 Aligned Residues 86 % Identity 13% Template c3p5tE_ PDB info PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex Resolution 2.70 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		K	Y	A	A	H	T	A	D	T	R	L	H	L	A	F	S	S	W	L	F	N	A	K	G	.	.	Q	L	L	V	T	R	R	A	L	S	K	K	A	W	P	G	V	W	T	N	S	V	C	G	H	P	Q	L	G	E	S	N	E	D	A	V	I	R	R	C	R	Y	E	L	G	V	E	I	T	P	P	E	S	I
Query Conservation																										.	.
Alig confidence																										.	.																	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence		M	R	E	E	F	D	K	I	G	M	R	R	T	V	E	G	V	L	I	V	H	E	H	R	L	P	H	V	L	L	L	Q	L	G	T	T	F	F	K	L	P	G	.	.	.	.	.	.	.	G	E	L	N	P	G	E	D	E	V	E	G	L	K	R	L	M	T	E	I	L	G	V	L	Q	D	W	V	I	D	D
Template Known Secondary structure									S		S													T	T										T	T	T					S		.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.								.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	D	F	R	Y	R	A	T	D	P	S	G	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	I	G	N	W	W	R	P	N	F	E	P	P	Q	Y
Template Known Secondary structure										S	S	S	S			B
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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