Job Description Q46822 Confidence 100.00% Date Thu Jan 5 12:34:47 GMT 2012 Rank 2 Aligned Residues 182 % Identity 24% Template c2pnyA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 Resolution 1.81 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.																																																		.
Query SS confidence																												.	.	.	.																																																		.
Query Sequence		M	Q	T	E	H	V	I	L	L	N	A	Q	G	V	P	T	G	T	L	E	K	Y	A	A	H	T	.	.	.	.	A	D	T	R	L	H	L	A	F	S	S	W	L	F	N	A	K	G	Q	L	L	V	T	R	R	A	L	S	K	K	A	W	P	G	V	W	T	N	S	V	C	G	H	P	Q	L	G	E	S	.
Query Conservation																												.	.	.	.																																																		.
Alig confidence																												.	.	.	.																																																		.
Template Conservation
Template Sequence		R	L	E	E	M	L	I	V	V	D	E	N	D	K	V	I	G	A	D	T	K	R	N	C	H	L	N	E	N	I	E	K	G	L	L	H	R	A	F	S	V	V	L	F	N	T	K	N	R	I	L	I	Q	Q	R	S	D	T	K	V	T	F	P	G	Y	F	T	D	S	C	S	S	H	P	L	Y	N	P	A	E
Template Known Secondary structure			T	T								T	T													T	B					T	T	T													T	T										T	T		S	S	S	T	T		B			S						B	S	S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
										76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																							.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																							.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	N	E	D	A	V	I	R	R	C	R	Y	E	L	G	V	E	I	T	P	P	E	S	.	.	.	.	I	Y	P	D	F	R	Y	R	A	T	D	P	S	G	I	V	E	N	E	V	C	P	V	F	A	A	R	T	T	S	A	L	Q	I	N	D	D	E	V	M	D	Y	Q	W	C	D
Query Conservation		.	.	.	.	.	.	.	.																							.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation
Template Sequence		L	E	E	K	D	A	I	G	V	R	R	A	A	Q	R	R	L	Q	A	E	L	G	I	P	G	E	Q	I	S	P	E	D	I	V	F	M	T	I	Y	H	H	K	A	K	S	D	R	I	W	G	E	H	E	I	C	Y	L	L	L	V	R	K	N	V	T	L	N	P	D	P	S	E	T	K	S	I	L	Y	L	S
Template Known Secondary structure					G	G	G																			T	T	T			G	G	G	S												S	S	S	S	B																					T	T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.						170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure												.	.	.																	.	.	.	.	.
Query SS confidence												.	.	.																	.	.	.	.	.
Query Sequence		L	A	D	V	L	H	G	I	D	A	.	.	.	T	P	W	A	F	S	P	W	M	V	M	Q	A	T	N	R	.	.	.	.	.	E	A	R	K	R	L	S	A	F	T	Q	L	K
Query Conservation												.	.	.																	.	.	.	.	.
Alig confidence												.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	E	L	W	E	L	L	E	R	E	A	R	G	E	V	K	V	T	P	W	L	R	T	I	A	E	R	F	L	Y	R	W	W	P	H	L	D	D	V	T	P	F	V	E	L	H
Template Known Secondary structure															T	S	S		B											T					G	G	G	T	T			G	G	G			S	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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