Job Description Q46822 Confidence 100.00% Date Thu Jan 5 12:34:47 GMT 2012 Rank 3 Aligned Residues 182 % Identity 25% Template c2i6kA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.																																																		.
Query SS confidence																												.	.	.	.																																																		.
Query Sequence		M	Q	T	E	H	V	I	L	L	N	A	Q	G	V	P	T	G	T	L	E	K	Y	A	A	H	T	.	.	.	.	A	D	T	R	L	H	L	A	F	S	S	W	L	F	N	A	K	G	Q	L	L	V	T	R	R	A	L	S	K	K	A	W	P	G	V	W	T	N	S	V	C	G	H	P	Q	L	G	E	S	.
Query Conservation																												.	.	.	.																																																		.
Alig confidence																												.	.	.	.																																																		.
Template Conservation
Template Sequence		L	L	A	E	X	C	I	L	I	D	E	N	D	N	K	I	G	A	E	T	K	K	N	C	H	L	N	E	N	I	E	K	G	L	L	H	R	A	F	S	V	F	L	F	N	T	E	N	K	L	L	L	Q	Q	R	S	D	A	K	I	T	F	P	G	C	F	T	N	T	C	C	S	H	P	L	S	N	P	A	E
Template Known Secondary structure		G	G	G	S							T	T	S												T	B					T	T	T													T	T										T	T		S	S	S	T	T				S	S						B	S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
										76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																			.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																			.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	N	E	D	A	V	I	R	R	C	R	Y	E	L	G	V	E	I	T	.	.	.	.	P	P	E	S	I	Y	P	D	F	R	Y	R	A	T	D	P	S	G	I	V	E	N	E	V	C	P	V	F	A	A	R	T	T	S	A	L	Q	I	N	D	D	E	V	M	D	Y	Q	W	C	D
Query Conservation		.	.	.	.	.	.	.	.																			.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation
Template Sequence		L	E	E	S	D	A	L	G	V	R	R	A	A	Q	R	R	L	K	A	E	L	G	I	P	L	E	E	V	P	P	E	E	I	N	Y	L	T	R	I	H	Y	K	A	Q	S	D	G	I	W	G	E	H	E	I	D	Y	I	L	L	V	R	X	N	V	T	L	N	P	D	P	N	E	I	K	S	Y	C	Y	V	S
Template Known Secondary structure		S			G	G	G																			G	G	G	S		G	G	G													S	S	S	S	B																					T	T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		144	.	.	.	.	.	150	.				.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.						.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure										.	.	.																		.	.	.	.	.
Query SS confidence										.	.	.																		.	.	.	.	.
Query Sequence		L	A	D	V	L	H	G	I	.	.	.	D	A	T	P	W	A	F	S	P	W	M	V	M	Q	A	T	N	.	.	.	.	.	R	E	A	R	K	R	L	S	A	F	T	Q	L	K
Query Conservation										.	.	.																		.	.	.	.	.
Alig confidence										.	.	.																		.	.	.	.	.
Template Conservation
Template Sequence		K	E	E	L	K	E	L	L	K	K	A	A	S	G	E	I	K	I	T	P	W	F	K	I	I	A	A	T	F	L	F	K	W	W	D	N	L	N	H	L	N	Q	F	V	D	H	E
Template Known Secondary structure														T	T	S	S		B											T							T	S	S			G	G	G			S	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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