Job Description P0C0V0 Confidence 95.73% Date Thu Jan 5 11:30:02 GMT 2012 Rank 321 Aligned Residues 117 % Identity 19% Template c2wv9A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus Resolution 2.75 Å

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		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.																				.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	K	F	M	A	L	G	S	G	V	I	I	D	A	D	K	G	Y	V	V	T	N	N	H	V	V	D	N	A	T	V	I	K	V	Q	L	S	D	G	R	K	F	D	A	K	M	V	G	K	D	P	R	S	D	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	Q	I	Q
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.		.													.	.	.	.											.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.		.													.	.	.	.											.	.
Template Sequence		L	G	R	Y	Q	A	G	V	G	V	M	H	.	.	E	.	G	V	F	H	T	L	W	H	T	T	R	G	.	.	.	.	A	A	I	M	S	G	E	G	R	L	.	.	T	P	Y	W	G	N	V	K	E	D	R	V	T	Y	G	G	P	W	K	L	D	Q	K	W	N	G	V	D	D	V	Q	M	I	V	V	E
Template Known Secondary structure		S												.	.	T	.	T										T	T	.	.	.	.						S	S	S			.	.							T	T	T	T					S	S	S									T	T
Template Predicted Secondary structure														.	.		.													.	.	.	.											.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.			.		.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	K	N	L	T	A	I	K	M	A	D	S	D	A	L	R	V	G	D	Y	T	V	A	I	G	N	P	F	G	L	G	E	T	V	T	S	G	I	V	S	A	L	G	R	S	G	L	N	A	E	N	Y	E	N	F	I	Q	T	D	A	A	I	N	R	G	N	S	G	G	A	L	V	N	L	N	G	E	L	I
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	K	P	A	I	N	V	Q	T	K	P	G	I	F	K	T	A	H	G	E	I	G	A	V	S	L	D	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	T	S	G	S	P	I	V	N	S	N	G	E	I	I
Template Known Secondary structure		T	T	S															S	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	T	T						T	T	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.																																			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	N	T	A	I	L	A	P	D	G	G	N	I	G	I	G	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	Y	G	N	G	V	I	L	G	N	G	A	Y	V	S	A	I	V
Template Known Secondary structure											S	S	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions