Job Description P0C0V0 Confidence 100.00% Date Thu Jan 5 11:30:02 GMT 2012 Rank 8 Aligned Residues 290 % Identity 34% Template c1lcyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:htra2 serine protease; PDBTitle: crystal structure of the mitochondrial serine protease htra2 Resolution 2.00 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	A	T	T	A	Q	Q	M	P	S	L	A	P	M	L	E	K	V	M	P	S	V	V	S	I	N	V	E	G	S	T	T	V	N	T	P	R	M	P	R	N	F	Q	Q	F	F	G	D	D	S	P	F	C	Q	E	G	S	P	F	Q	S	S	P	F	C	Q	G	G	Q	G	G	N	G	G	G	Q	Q	Q	K
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	A	S	P	R	S	Q	Y	N	F	I	A	D	V	V	E	K	T	A	P	A	V	V	Y	I	E	I	L	D	R	H	P	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	E	V
Template Known Secondary structure										S											G	G	G											T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																																										.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	M	A	L	G	S	G	V	I	I	D	A	D	K	G	Y	V	V	T	N	N	H	V	V	D	N	A	T	V	I	K	V	Q	L	S	D	G	R	K	F	D	A	K	M	V	G	K	D	P	R	S	D	I	A	L	I	Q	I	Q	N	P	K	N	L	T	A	I	K	M	A	D	S	D	A	L	R	V	G	D	Y
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		P	I	S	N	G	S	G	F	V	V	A	A	D	.	G	L	I	V	T	N	A	H	V	V	A	D	R	R	R	V	R	V	R	L	L	S	G	D	T	Y	E	A	V	V	T	A	V	D	P	V	A	D	I	A	T	L	R	I	Q	T	K	E	P	L	P	T	L	P	L	G	R	S	A	D	V	R	Q	G	E	F
Template Known Secondary structure													T	T	.	T										T	T		S							T	T	S												T	T	T	T									S	S							B			G	G	G			T	T
Template Predicted Secondary structure															.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	A	I	G	N	P	F	G	L	G	E	T	V	T	S	G	I	V	S	A	L	G	R	S	G	L	N	A	E	N	Y	E	N	F	I	Q	T	D	A	A	I	N	R	G	N	S	G	G	A	L	V	N	L	N	G	E	L	I	G	I	N	T	A	I	L	A	P	D	G	G	N	I	G	I	G	F	A	I	P
Query Conservation
Alig confidence																										.	.	.	.	.	.																																								.	.	.	.	.
Template Conservation																										.	.	.	.	.	.																																								.	.	.	.	.
Template Sequence		V	V	A	M	G	S	P	F	A	L	Q	N	T	I	T	S	G	I	V	S	S	A	Q	R	.	.	.	.	.	.	P	N	V	E	Y	I	Q	T	D	A	A	I	D	F	G	N	A	G	G	P	L	V	N	L	D	G	E	V	I	G	V	N	T	M	K	V	T	A	G	.	.	.	.	.	I	S	F	A	I	P
Template Known Secondary structure								T	T	S	S	S	S							B		S		S		.	.	.	.	.	.									S	S			S	T	T	T	T	T	S					T	T	S												T	T	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.																																								.	.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.							.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.
Query Sequence		S	N	M	V	K	N	L	T	S	Q	M	V	E	Y	G	Q	V	K	R	G	E	L	G	I	M	G	T	E	L	N	S	E	L	A	K	A	M	K	V	.	.	.	.	.	.	D	A	Q	R	G	A	F	V	S	Q	V	L	P	N	S	S	A	A	K	A	G	I	K	A	G	D	V	I	T	S	L	N	G	K	P
Query Conservation																																									.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.
Template Sequence		S	D	R	L	R	E	F	L	.	.	.	.	.	.	.	.	.	H	R	R	Y	I	G	V	M	M	L	T	L	S	P	S	I	L	A	E	L	Q	L	R	E	P	S	F	P	D	V	Q	H	G	V	L	I	H	K	V	I	L	G	S	P	A	H	R	A	G	L	R	P	G	D	V	I	L	A	I	G	E	Q	M
Template Known Secondary structure									T	.	.	.	.	.	.	.	.	.																					T	T	S		T	T	S				S	S									T	T	S						T			T	T							T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.										210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	S	F	A	A	L	R	A	Q	V	G	T	M	P	V	G	S	K	L	T	L	G	L	L	R	D	G	K	Q	V	N	V	N	L	E	L	Q	Q	S	S
Query Conservation
Alig confidence													.	.	.
Template Conservation													.	.	.
Template Sequence		V	Q	N	A	E	D	V	Y	E	A	V	.	.	.	R	T	Q	S	Q	L	A	V	Q	I	R	R	G	R	E	T	L	T	L	Y	V	T	P	E	V	T	E
Template Known Secondary structure				S									.	.	.	T	T		S	S								T	T
Template Predicted Secondary structure													.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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