Job Description P25535 Confidence 99.35% Date Thu Jan 5 11:42:02 GMT 2012 Rank 65 Aligned Residues 272 % Identity 15% Template d1jnra2 SCOP info FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain Resolution 1.60

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure																										.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	Q	S	V	D	V	A	I	V	G	G	G	M	V	G	L	A	V	A	C	G	L	Q	G	.	.	.	.	S	G	L	R	V	A	V	L	E	Q	R	V	Q	E	P	L	A	A	N	A	P	P	Q	L	R	V	S	A	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																						.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		V	E	.	T	D	I	L	I	I	G	G	G	F	S	G	C	G	A	A	Y	E	A	A	Y	W	A	K	L	G	G	L	K	V	T	L	V	E	K	A	A	V	E	R	S	G	A	V	A	Q	G	L	S	A	I	N	T	Y	I	D	L	T	G	R	S	E	R	Q	N	T	L	E	D	Y	V	R	Y	V	T	L	D
Template Known Secondary structure				.		S							S															T	T	T	T								S	S		T	T	T		S	T	T	T	T						S					S	S	S	S	B	S
Template Predicted Secondary structure				.
Template SS confidence
		21	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
																			55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	S	E	K	L	L	T	R	L	G	V	W	Q	D	I	L	S	R	R	A	S	C	Y	H	G	M	E	V	W	D	K	D	S	F	G	H	I	S	F	D	D	Q	S	M	G	Y	S	H	L	G	H	I	V	E	N	S	V	I	H	Y	A	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	M	G	L	A	R	E	D	L	V	A	D	Y	A	R	H	V	D	G	T	V	H	L	F	E	K	W	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	W	K	T	P	D	G	K	Y	V	R	E	G	Q	W	Q	I	M	I	H	G	E	S	Y	K	P	I	I
Template Known Secondary structure		T	T	T																								T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B		B		T	T	S		B		B	S	S	S	S							T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.											.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.
Query Sequence		W	N	K	A	H	Q	S	S	D	I	T	L	L	A	P	A	.	.	.	.	.	.	.	.	.	.	E	L	Q	Q	V	A	W	G	E	N	E	T	F	L	T	L	K	D	G	S	M	L	T	A	R	L	V	I	G	A	D	G	A	N	S	W	L	R	N	K	A	D	I	P	L	T	F	W	D	Y	Q	H	H	A
Query Conservation																		.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.																																																				.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		A	E	A	A	K	M	A	V	G	E	E	N	I	Y	E	R	V	F	I	F	E	L	L	K	D	N	N	D	P	N	A	V	A	G	A	V	G	F	S	V	R	E	P	K	F	Y	V	F	K	A	K	A	V	I	L	A	T	G	G	A	T	L	L	F	R	P	R	S	T	G	E	A	A	G	R	T	W	.	.	.
Template Known Secondary structure											G	G	G				S										T	T		T	T	B									S	S	S	S								S									B		S	S	S			S			S	G	G	G	G			S	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	A	T	I	R	T	E	E	P	H	D	A	V	A	R	Q	V	F	H	G	E	G	I	L	A	F	L	P	L	S	D	P	H	L	C	S	I	V	W	S	L	S	P	E	E	A	Q	R	M	Q	Q	A	S	E	D	E	F	N	R	A	L	N	I	A	F	D	N	R	L	G	L	C	K	V	E	S	A	R	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	I	F	D	T	G	S	G	Y	Y	M	G	L	K	A	G	A	M	L	T	Q	A	G	F	W	V	C	G	P	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		T	T		B	S										T														T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		268	.	270							.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320			.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.																																																			.	.
Query SS confidence					.	.	.	.	.	.																																																			.	.
Query Sequence		V	F	P	.	.	.	.	.	.	L	T	G	R	Y	A	R	Q	F	A	S	H	R	L	A	L	V	G	D	A	A	H	T	I	H	P	L	A	G	Q	G	V	N	L	G	F	M	D	A	A	E	L	I	A	E	L	K	R	L	H	.	.	R	Q	G	K	D	I	G	Q	Y	I	Y	L	R	R	Y	E	R	S	R
Query Conservation					.	.	.	.	.	.																																																			.	.
Alig confidence					.	.	.	.	.	.																																.	.	.																	.	.
Template Conservation																																										.	.	.
Template Sequence		L	M	P	E	E	Y	A	K	L	F	P	L	K	Y	N	R	M	T	T	V	K	G	L	F	A	I	G	D	C	A	G	A	N	P	H	K	F	S	S	G	.	.	.	S	F	T	E	G	R	I	A	A	K	A	A	V	R	F	I	L	E	Q	K	P	N	P	E	I	D	D	A	V	V	E	E	L	K	K	K	A
Template Known Secondary structure		T							T	T		S	S			T	T	B		S	S	B	T					G	G	G	B		S									.	.	.
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.				.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
		340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	S	A	A	L	M	L	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	A	P	M	E	R	F	M	Q	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		489	490	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions