Return to main results Retrieve Phyre Job Id

Job DescriptionP25535
Confidence99.15%DateThu Jan 5 11:42:02 GMT 2012
Rank83Aligned Residues162
% Identity15%Templatec2aczA_
PDB info PDB header:oxidoreductase/electron transportChain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50....
Predicted Secondary structure 



























..........................
Query SS confidence 





















































. . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVQEPLAANAPPQLRVSAIN. . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation 
   

 




 


  
  

  
  
 
 

                  
 ..........................
Alig confidence 





















































..........................
Template Conservation      





 
 


 

  

  
  
 



    

 
  
 

          
  
    
            
Template Sequence  VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDA
Template Known Secondary structure  B

BS


STT


SS
GGGSGGGG

S




SSS


TS
S
Template Predicted Secondary structure 



































Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   55....60.........70.........80.........90.........100.........110.........120......
Predicted Secondary structure  ........


























Query SS confidence  . . . . . . . .







































































Query Sequence  . . . . . . . . AASEKLLTRLGVWQDILSRRASCYHGMEVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWNKAHQSSD
Query Conservation  ........      
  


                                         
 
  
   
         
Alig confidence  ........











......





















































Template Conservation 
          
  
   

...... 
     
                    
        
      
       

Template Sequence  IEYMCKTGPEAILELEHMGL. . . . . . PFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHT
Template Known Secondary structure  TTT
......


B
S

SS



SSB

TTSSS
STT
TT
Template Predicted Secondary structure 


......



































Template SS confidence 















































































   85....90.........100.... .....110.........120.........130.........140.........150........
 
   127..130.........140...... ...150.........160........
Predicted Secondary structure 



















......


















Query SS confidence 



















. . . . . .





















Query Sequence  ITLLAPAELQQVAWGENETF. . . . . . LTLKDGSMLTARLVIGADGANS
Query Conservation                      ......             

 


  
Alig confidence 



















......





















Template Conservation   
        

    
 
 

       
    
 
  






  
Template Sequence  TIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG
Template Known Secondary structure  S
TTS
TTT


BS





T
Template Predicted Secondary structure 


















Template SS confidence 















































   159160.........170.........180.........190.........200......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions