Job Description P60716 Confidence 22.44% Date Thu Jan 5 12:07:02 GMT 2012 Rank 430 Aligned Residues 142 % Identity 14% Template c3lopA_ PDB info PDB header:substrate binding protein Chain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum Resolution 1.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	V	A	P	D	A	N	E	P	V	K	L	A	Q	T	I	A	D	M	A	L	R	Y	V	V	I	T	S	V	D	R	D	D	L	R	D	G	G	A	Q	H	F	A	D	C	I	T	A	I	R	E	K	S	P	Q	I	K	I	E	T	L	V	P	D	F	R	G	R	M	D	R	A	L	D	I	L	T	A	T
Query Conservation
Alig confidence																																	.	.	.	.
Template Conservation																																	.	.	.	.
Template Sequence		P	I	K	A	S	Y	Q	Q	E	I	D	K	X	I	T	A	L	V	T	I	G	V	T	R	I	G	V	L	Y	Q	E	.	.	.	.	D	A	L	G	K	E	A	I	T	G	V	E	R	T	L	K	A	H	A	L	A	I	T	A	X	A	S	Y	P	R	N	T	A	N	V	G	P	A	V	D	K	L	L	A	A
Template Known Secondary structure				S																	T	T										T	.	.	.	.	T																T	T	T				S							T	T	S													S
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		P	P	D	V	F	N	H	N	L	E	N	V	P	R	I	Y	R	Q	V	R	P	G	A	D	Y	N	W	S	L	K	L	L	E	R	F	K	E	A	H	P	E	I	P	T	K	S	G	L	M	V	G	L	.	G	E	T	N	E	E	I	I	E	V	M	R	D	L	R	R	H	G	V	T	M	L	T	L	G	Q	Y
Query Conservation																																																						.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.				.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Sequence		D	V	Q	A	I	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	T	A	E	P	A	A	Q	F	V	R	Q	Y	R	A	R	G	G	E	A	Q	L	.	.	.	.	.	L	G	L	S	S	I	D	P	G	I	L	Q	K	V	A	G	L	D	A	V	R	G	Y	S	L	A	L	V	X	P	N
Template Known Secondary structure				S					.	.	.	.	.	.	.	.	.	.	.	.	.	.		S															T	T						.	.	.	.	.				T	T	S															T	T							S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.															.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.						.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		266	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	P	S	R	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	K	S	V	N
Template Known Secondary structure		T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions