Job Description P60716 Confidence 92.79% Date Thu Jan 5 12:07:02 GMT 2012 Rank 43 Aligned Residues 202 % Identity 13% Template c3ktcB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution Resolution 1.54 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.							.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.								170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.																								.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.																								.	.	.	.	.	.	.
Query Sequence		A	N	E	P	V	K	L	A	Q	T	I	A	D	M	A	L	R	Y	V	V	I	T	S	V	D	R	D	D	L	R	D	G	G	A	.	.	.	.	.	.	Q	H	F	A	D	C	I	T	A	I	R	E	K	S	P	Q	I	K	I	E	T	L	V	.	.	.	.	.	.	.	P	D	F	R	G	R	M	D	R	A
Query Conservation																																				.	.	.	.	.	.																								.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	L	X	H	E	S	A	G	I	V	R	E	L	G	A	N	Y	V	K	V	W	P	G	Q	D	G	W	D	Y	P	F	Q	V	S	H	K	N	L	W	K	L	A	V	D	G	X	R	D	L	A	G	A	N	P	D	V	K	F	A	I	E	Y	K	P	R	E	P	R	V	K	X	T	W	D	S	A	A	R	T
Template Known Secondary structure																T		S							T	T				S	S	T	T	S	S																			T		T	T	S								S		S	S	S	S			S	S		S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.						.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.								.
Query SS confidence																																																										.	.	.	.	.								.
Query Sequence		L	D	I	L	T	A	T	P	P	D	V	F	N	H	N	L	E	N	V	P	R	I	Y	R	Q	V	R	P	G	A	D	Y	N	W	S	L	K	L	L	E	R	F	K	E	A	H	P	E	I	P	T	K	S	G	L	M	.	.	.	.	.	V	G	L	G	E	T	N	.	E	E	I	I	E	V	M	R	D	L	R
Query Conservation																																																										.	.	.	.	.								.
Alig confidence																										.	.	.	.																			.										.	.	.	.	.								.
Template Conservation																										.	.	.	.																			.
Template Sequence		L	L	G	I	E	D	I	G	L	D	N	V	G	V	L	L	D	F	G	H	A	L	Y	G	.	.	.	.	G	E	S	P	A	D	S	A	Q	L	I	I	D	R	G	R	L	F	.	G	X	D	V	N	D	N	L	R	G	W	D	D	D	L	V	V	G	T	V	H	X	T	E	I	F	E	F	F	Y	V	L	K
Template Known Secondary structure									T		T	T													T	.	.	.	.	T													T	T				.				B		B			S	S	S				B		T	T	S	S
Template Predicted Secondary structure																										.	.	.	.																			.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		254	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		R	H	G	V	T	M	.	L	T	L	G	Q	Y	L	Q	P	S	R	H	H	L	P	V	Q	R	Y	V	S	P	D	E	F	D	E	M	K	A	E	A	L	A	M	G	F	T	H	A	A	C	G	P	F	V	R	S	S	Y	H	A	D	L	Q	A	K	G	M	E	V	K
Query Conservation								.
Alig confidence								.																					.	.
Template Conservation																													.	.
Template Sequence		I	N	N	W	Q	G	V	W	Q	L	D	Q	F	P	F	R	E	N	H	V	E	A	A	Q	L	S	I	.	.	R	F	L	K	H	I	Y	R	A	L	D	K	L	D	I	P	A	L	Q	A	A	Q	E	A	Q	N	P	L	Q	A	Q	R	I	V	Q	D	A	L	L	S
Template Known Secondary structure			T	T												T	T	S											.	.													S												T														T	S
Template Predicted Secondary structure																													.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions