Return to main results Retrieve Phyre Job Id

Job DescriptionP60716
Confidence97.42%DateThu Jan 5 12:07:02 GMT 2012
Rank17Aligned Residues152
% Identity13%Templatec3bleA_
PDB info PDB header:transferaseChain: A: PDB Molecule:citramalate synthase from leptospira interrogans; PDBTitle: crystal structure of the catalytic domain of licms in2 complexed with malonate
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   105....110.........120. ........130.........140.........150.........160.........170.........180...
Predicted Secondary structure 







.























Query SS confidence 
















.





























































Query Sequence  HGRPVAPDANEPVKLAQ. TIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDIL
Query Conservation   
       

   

 .     
 
 



     

 
         
  

       
  
         
 
  
Alig confidence 
















.
















...





























...








Template Conservation 
          
  
   

   

  



    ...                              ...         
Template Sequence  QTRGVSFSTSEKLNIAKFLLQKLNVDRVEIASARV. . . SKGELETVQKIMEWAATEQLTERIEILGFV. . . DGNKTVDWI
Template Known Secondary structure  TSTT



TT

STTS...
TTTT
GGGS...STT
Template Predicted Secondary structure 















...










...

Template SS confidence 















































































   20.........30.........40.........50.... .....60.........70.........80.... .....90...
 
   184.....190.........200.........210 .........220.........230.. .......240.........250.........
Predicted Secondary structure 















...



.












Query SS confidence 


























. . .





















.


























Query Sequence  TATPPDVFNHNLENVPRIYRQVRPGAD. . . YNWSLKLLERFKEAHPEIPTKS. GLMVGLGETNEEIIEVMRDLRRHGVTM
Query Conservation    

        

   
   

    ...    
  
  

  

 
 
 
. 











 


  


 


 
Alig confidence 


























...





















.


























Template Conservation     
   
      
          
           
  
   
  
                            
 
 
Template Sequence  KDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIER
Template Known Secondary structure  T


ST


TT
T
TS

S
Template Predicted Secondary structure 
























Template SS confidence 















































































   94.....100.........110.........120.........130.........140.........150.........160.........170...
 
   260..
Predicted Secondary structure 
Query SS confidence 


Query Sequence  LTL
Query Conservation 


Alig confidence 


Template Conservation 
 
Template Sequence  IFL
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 


   174..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions