Job Description P60716 Confidence 30.36% Date Thu Jan 5 12:07:02 GMT 2012 Rank 352 Aligned Residues 128 % Identity 15% Template c2egwB_ PDB info PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand Resolution 2.80 Å

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		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		A	P	D	A	N	E	P	V	K	L	A	Q	T	I	A	D	M	A	L	R	Y	V	V	I	T	S	V	D	R	D	D	L	R	D	G	G	.	.	.	.	A	Q	H	F	A	D	C	I	T	A	I	R	E	K	S	P	Q	I	K	I	E	T	L	V	P	D	F	R	G	R	M	D	R	A	L	D	I	L	T	A
Query Conservation																																						.	.	.	.
Alig confidence																																						.	.	.	.																									.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		T	V	D	L	K	T	M	D	T	I	V	R	Q	A	T	E	L	G	V	L	T	F	V	P	I	I	S	E	R	S	F	Q	K	E	E	A	I	L	K	K	T	E	K	W	K	R	I	V	I	E	A	M	K	Q	S	R	R	P	I	P	M	E	I	K	.	.	.	.	.	K	P	V	R	L	S	D	L	I	P	E
Template Known Secondary structure			S	S	T													T	T										T	T	S																									T	T			S						.	.	.	.	.					G	G	G
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.	150	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		T	P	P	D	V	F	N	H	N	L	E	N	V	P	R	I	Y	R	Q	V	R	P	G	A	D	Y	N	W	S	L	K	L	L	E	R	F	K	E	A	H	P	E	I	P	T	K	S	G	L	M	V	G	L	.	.	G	E	T	N	E	E	I	I	E	V	M	R	D	L	R	R	H	G	V	T	M	L	T	L	G
Query Conservation																																																							.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.										.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Sequence		S	E	E	N	I	I	L	D	N	F	Y	E	G	V	K	P	K	D	V	N	L	E	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	S	V	V	V	G	P	E	G	G	F	S	K	R	E	S	Q	I	.	.	.	.	L	R	E	K	G	F	K	S	V	L	L	E
Template Known Secondary structure		S	S							S	S	S			B		G	G	G	S		T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T										.	.	.	.				T	T							S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.																						.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.
		264	.		.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		Q	Y	.	L	Q
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		P	Y	T	L	R
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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