Job Description P60716 Confidence 29.95% Date Thu Jan 5 12:07:02 GMT 2012 Rank 358 Aligned Residues 149 % Identity 14% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		108	.	110	.	.	.	.	.	.	.	.	.								120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.															.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure														.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Query SS confidence														.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Query Sequence		P	V	A	P	D	A	N	E	P	V	K	L	.	.	.	.	.	.	.	A	Q	T	I	A	D	M	A	L	R	Y	V	V	I	T	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	D	D	L	R	D	G	G	A	Q	H	.	.	.	.	F	A	D	C	I	T	A	I	R	E	K	S	P	Q
Query Conservation														.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Alig confidence														.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation
Template Sequence		C	K	E	M	D	L	S	D	I	A	Q	V	Q	Q	F	Y	V	D	A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S
Template Known Secondary structure																											T	T		S								T	T									T	T	T					S	T	T	S	S	S																				T	T
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
					163	.	.	.	.	.	.	170	.	.	.	.	.	.								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure		.	.	.															.	.	.	.	.	.	.																																						.	.
Query SS confidence		.	.	.															.	.	.	.	.	.	.																																						.	.
Query Sequence		.	.	.	I	K	I	E	T	L	V	P	D	F	R	G	R	M	.	.	.	.	.	.	.	D	R	A	L	D	I	L	T	A	T	P	P	D	V	F	N	H	N	L	E	N	V	P	R	I	Y	R	Q	V	R	P	G	A	D	Y	N	W	.	.	S	L	K	L	L	E	R	F	K	E	A	H	P	E	I	P	T
Query Conservation		.	.	.															.	.	.	.	.	.	.																																						.	.
Alig confidence		.	.	.															.	.	.	.	.	.	.																																						.	.												.
Template Conservation																																																																												.
Template Sequence		D	C	A	I	A	T	R	F	G	V	D	T	V	Y	G	P	G	Q	I	E	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	.	S	K	K	P	V
Template Known Secondary structure		T	S											S	S		T	T	S			T	T	T										T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T									T	T	.		S	S
Template Predicted Secondary structure																																																																												.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	G	L	M	V	G	L	G	E	T	N	E	E	I	I	E	V	M	R	D	L	R	R	H	G	V	T	M	L	T	L	G
Query Conservation
Alig confidence		.	.	.															.	.	.
Template Conservation		.	.	.															.	.	.
Template Sequence		.	.	.	L	G	V	G	R	Y	T	D	P	E	K	M	I	E	.	.	.	I	V	T	K	G	Y	A	D	I	I	G	C	A
Template Known Secondary structure		.	.	.				S											.	.	.				T	T	S		S	B				S
Template Predicted Secondary structure		.	.	.															.	.	.
Template SS confidence
					295	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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