Job Description P0AEP7 Confidence 97.46% Date Thu Jan 5 11:23:52 GMT 2012 Rank 98 Aligned Residues 247 % Identity 16% Template c1ni4D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component: beta PDBTitle: human pyruvate dehydrogenase Resolution 1.95 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.						.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																					.	.					.	.	.	.	.																	.								.
Query SS confidence																					.	.					.	.	.	.	.																	.								.
Query Sequence		K	M	R	A	V	D	A	A	M	Y	V	L	E	K	E	G	I	T	T	.	.	A	F	G	V	.	.	.	.	.	P	G	A	A	I	N	P	F	Y	S	A	M	R	K	H	G	.	G	I	R	H	I	L	A	.	R	H	V	E	G	A	S	H	M	A	E	G	Y	T	R	A	T	A	G	N	I	G	V	C	L
Query Conservation																					.	.					.	.	.	.	.																	.								.
Alig confidence																					.	.					.	.	.	.	.																	.								.																.		.
Template Conservation																																																																								.		.
Template Sequence		Q	V	T	V	R	D	A	I	N	Q	G	X	D	E	E	L	E	R	D	E	K	V	F	L	L	G	E	E	V	A	Q	Y	D	G	A	Y	K	V	S	R	G	L	W	K	K	Y	G	D	K	R	I	I	D	T	P	I	S	E	X	G	F	A	G	I	A	V	G	A	A	X	.	A	.	G	L	R	P	I	C	E
Template Known Secondary structure																					T	T						T	T		S	T	T			T	T	S	T	T	T	T							T	T	T						S															.	T	.	T
Template Predicted Secondary structure																																																																								.		.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.		.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.								.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																																			.
Query SS confidence																					.	.	.	.	.	.	.																																			.
Query Sequence		G	T	S	G	P	A	G	T	D	M	I	T	A	L	Y	S	A	S	A	.	.	.	.	.	.	.	D	S	I	P	I	L	C	I	T	G	Q	A	P	R	A	R	L	H	K	E	D	F	Q	A	V	D	I	E	A	I	A	K	P	V	.	S	K	M	A	V	T	V	R	E	A	A	L	V	P	R	V	L	Q	Q
Query Conservation																					.	.	.	.	.	.	.																																			.
Alig confidence																					.	.	.	.	.	.	.																																			.
Template Conservation
Template Sequence		F	X	T	F	N	F	S	X	Q	A	I	D	Q	V	I	N	S	A	A	K	T	Y	Y	X	S	G	G	L	Q	P	V	P	I	V	F	R	G	P	N	G	A	S	A	G	V	A	A	Q	H	S	Q	C	F	A	A	W	Y	G	H	C	P	G	L	K	V	V	S	P	W	N	S	E	D	A	K	G	L	I	K	S
Template Known Secondary structure			S	S	G	G	G	G	G	G	T							T	T	T	T					T	T	S	S												S			S	S			G	G	G										T	S	T	T								S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.																		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	H	L	M	R	S	G	R	P	G	P	V	L	V	D	L	P	F	D	V	Q	V	A	E	I	E	F	D	P	D	M	Y	E	P	L	P	V	Y	K	P	A	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	M	Q	I	E	K	A	V	E	M	L	I	Q	A	E	R	P	V	I
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.
Template Sequence		A	I	R	.	.	.	.	.	D	N	N	P	V	V	V	L	E	N	E	L	X	Y	G	V	P	F	E	F	P	P	E	A	Q	S	K	D	F	L	I	P	I	G	K	A	K	I	E	R	Q	G	T	H	I	T	V	V	S	H	S	R	P	V	G	H	C	L	E	A	A	A	V	L	S	K	E	G	V	E	C	E
Template Known Secondary structure					.	.	.	.	.	S	S	S								T	T	T	T	T											S	T	T					T	T									S	S							S	T															T	T
Template Predicted Secondary structure					.	.	.	.	.
Template SS confidence
		160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	G	G	G	V	I	N	A	D	A	A	A	L	L	Q	Q	F	A	E	L	T	S	V	P	V	I	P	T	L	M	G	W	G	C	I	P	D	D	H	E	L	M	A	G	M	V	G	L	Q	T	A	H	R	Y	G	N	A	T	L	L	A
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Sequence		V	I	N	X	R	T	I	R	P	X	D	X	E	T	I	E	A	S	V	X	K	T	N	H	L	V	T	V	.	.	.	.	.	.	.	.	.	E	G	G	W	P	Q	F	G	.	.	.	.	.	V	G	A	E	I	C	A	R	I	X	E	G
Template Known Secondary structure										T														S						.	.	.	.	.	.	.	.	.		S	S		S	T	T	S	.	.	.	.	.												S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.										.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions