Return to main results Retrieve Phyre Job Id

Job DescriptionP39357
Confidence6.15%DateThu Jan 5 11:59:47 GMT 2012
Rank4Aligned Residues127
% Identity12%Templatec3b9yA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   104.....110.........120.........130.........140.........150.........160.........170.........180...
Predicted Secondary structure 










Query SS confidence 















































































Query Sequence  SAFIVGIALFFEVGLILLVPILFAIAREAKISPMFMCVPMLSGLLVAHGFLPPHPGPTVIAREYGADVGLVLIYGIIVGI
Query Conservation                     

   
                          
                           
Alig confidence 











































.........


























Template Conservation    
 


 


 
       
   
   
 


  

  


  .........

 
 
     
  
   

  
 

 
Template Sequence  VGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLP. . . . . . . . . GLLGGFSAILIVPGIAVAQLTGIGITL
Template Known Secondary structure  TS



TT
TT.........STT
Template Predicted Secondary structure 







.........

Template SS confidence 















































































   284.....290.........300.........310.........320....... ..330.........340.........350....
 
   184.....190.........200.........210.........220.........230.........
Predicted Secondary structure 


















Query SS confidence 























































Query Sequence  PTFILCGPVLNKFCQRIIPDAFKKEGNIASLGATRRFSESEMPGFGISFLTAMLPV
Query Conservation                                                          
Alig confidence 























































Template Conservation    
 
 


 
 


          
  
                           
Template Sequence  ALALIGGVIAGALIKLTGTTKQAYEDSHEFIHLAGPEDEHKAERLVLEAKTEIQGL
Template Known Secondary structure  TT


SSTT
GGGTSSS


GGGTT
Template Predicted Secondary structure 
































Template SS confidence 























































   355....360.........370.........380.........390.........400.........410
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions