Job Description P39357 Confidence 5.08% Date Thu Jan 5 11:59:47 GMT 2012 Rank 8 Aligned Residues 186 % Identity 8% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																								.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.
Query Sequence		S	L	I	I	V	S	I	A	V	A	I	A	S	G	M	D	L	S	K	V	V	T	S	V	E	S	G	L	G	G	T	L	G	H	I	G	L	I	F	G	F	G	V	M	L	G	R	L	L	A	D	A	G	G	.	.	.	.	.	A	Q	R	I	A	L	T	M	L	N	Y	F	G	K	N	K	L	D	W	A	V
Query Conservation																																																								.	.	.	.	.
Alig confidence																												.																												.	.	.	.	.
Template Conservation																												.
Template Sequence		S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	.	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I
Template Known Secondary structure													T	T	T													.																								T						T	T		S										T	S	T	T
Template Predicted Secondary structure																												.
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	S	A	F	I	V	G	I	A	L	F	F	E	V	G	L	I	L	L	V	P	I	L	F	A	I	A	R	E	A	K	I	S	P	M	F	M	C	V	P	M	L	S	G	L	L	V	A	H	G	F	L	P	P	H	P	G	P	T	V	I	A	R	E	Y	G	A	D	V	G	L	V	L	I	Y	G	I	I	V
Query Conservation
Alig confidence																												.	.																																						.	.	.	.	.
Template Conservation																												.	.																																						.	.	.	.	.
Template Sequence		A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	.	.	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	.	.	.	.	.	N	V	T	I	V	A	A	T	P	F
Template Known Secondary structure																									T	T	T	.	.	T		S	S																									G	G	G							.	.	.	.	.
Template Predicted Secondary structure																												.	.																																						.	.	.	.	.
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.			.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.						520	.	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	P	T	F	I	L	C	G	P	V	L	N	K	F	C	Q	R	I	I	P	D	A	F	K	K	E	G	N	I	A	S	L	G	A	T	R	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q	R	F	N	A	R	L	A	R	E	R	R
Template Known Secondary structure																		T
Template Predicted Secondary structure
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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