Job Description P06136 Confidence 12.75% Date Thu Jan 5 10:59:05 GMT 2012 Rank 13 Aligned Residues 153 % Identity 11% Template c3mc8A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:alr2269 protein; PDBTitle: potra1-3 of the periplasmic domain of omp85 from anabaena Resolution 2.59 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.			.	.	120	.	.	.	.	.
Predicted Secondary structure																								.	.																																											.				.	.
Query SS confidence																								.	.																																											.				.	.
Query Sequence		D	A	Q	R	L	P	L	S	K	L	V	L	T	G	E	R	H	Y	T	R	N	D	.	.	D	I	R	Q	S	I	L	A	L	G	E	P	G	T	F	M	T	Q	D	V	N	I	I	Q	T	Q	I	E	Q	R	L	P	W	I	K	Q	V	S	V	R	K	Q	.	W	P	D	.	.	E	L	K	I	H	L	V	E
Query Conservation																								.	.																																											.				.	.
Alig confidence																								.	.																															.												.				.	.
Template Conservation																																																								.
Template Sequence		T	E	P	R	V	L	V	S	E	V	L	V	R	P	Q	S	G	Q	L	T	P	E	L	E	T	Q	V	Y	N	V	I	R	T	Q	P	G	R	T	T	T	R	S	Q	L	Q	E	D	I	N	A	I	F	G	T	.	G	F	F	S	N	V	Q	A	S	P	E	D	T	P	L	G	V	R	V	S	F	I	V	Q	P
Template Known Secondary structure																S	S	S																		T	T	S																T	T	.	S													T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.
Predicted Secondary structure																																																																						.	.	.	.
Query SS confidence																																																																						.	.	.	.
Query Sequence		Y	V	P	I	A	R	W	N	D	Q	H	M	V	D	A	E	G	N	T	F	S	V	P	P	E	R	T	S	K	Q	V	L	P	M	L	Y	G	P	E	G	S	A	N	E	V	L	Q	G	Y	R	E	M	G	Q	M	L	A	K	D	R	F	T	L	K	E	A	A	M	.	.	.	.	T	A	R	R	S	W	Q	L
Query Conservation																																																																						.	.	.	.
Alig confidence																				.	.																																																	.	.	.	.
Template Conservation																				.	.
Template Sequence		N	P	V	L	S	K	V	E	I	Q	A	N	P	G	T	N	V	P	.	.	S	V	L	P	Q	A	T	A	D	E	I	F	R	A	Q	Y	G	K	I	L	N	L	R	D	L	Q	E	G	I	K	E	L	T	K	R	Y	Q	D	Q	G	Y	V	L	A	N	V	V	G	A	P	Q	V	S	E	N	G	V	V	T	L
Template Known Secondary structure				B									S	T	T	S	S			.	.		S	S		T								G	G	G		S	S	B																				T	T		T	T											T	T
Template Predicted Secondary structure																				.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		202	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	N	N	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	V	A	E	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions