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Job DescriptionP34211
Confidence99.50%DateThu Jan 5 11:53:05 GMT 2012
Rank51Aligned Residues235
% Identity17%Templatec2hu7A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:acylamino-acid-releasing enzyme; PDBTitle: binding of inhibitors by acylaminoacyl peptidase
Resolution2.01 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90.........100.........110.........120.........130.........140.
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Query Sequence  LKYTDTGKDVSDENIPLVRLAMTKLPAKSKRKGSVIIISGGPGLPGINPYINFDWPVTNLRESWDIIGFDPRGVGQSFPA
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Template Sequence  VWVESFDGSR. . . . . . . VPTYVLESGRAPTPGPTVVLVHGGPFAEDSDSWDTFAASL. . AAAGFHVVMPNYRGSTGYG. .
Template Known Secondary structure 
TTS
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   336...340..... ....350.........360.........370.........380..... ....390.........400....
 
   142.......150.........160.........170.........180.........190.........200.........210.........220.
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Query Sequence  INCQQSNQERLVNVSEKQLILQKINACIHNTGAEVIRHIGSHEAVYDIERIRQALGDKQLTAVAYSYGTQIAALYAERFP
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . EEWRLKIIGDPCGG. ELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTMKP
Template Known Secondary structure  ........................TTTT
TTT.TT
TST
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   405....410........ .420.........430.........440.........450.........
 
   222.......230.........240.........250.........260.........270.........280.........290.........300.
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Query Sequence  SSIRSIVFDGVVDIDDLNDNFSWKLRQAHSYQETFDRFAAWCARTKSCPLSSDRNQAIHQFHQLLLKLHNSPLTDSRGES
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Template Sequence  GLFKAGVAGASVV. . . . . DWEEMYELSDAAFRNFIEQLT. . . . . . . . . . . GGSREIMRSR. . . . . . . . . . SPINHVD. . .
Template Known Secondary structure  TSSSS


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T

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GGG
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   460.........470.. .......480.........490... ......500... ......510
 
   302.......310.........320.........330.........340.........350.........360.........370.........380.
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Query Sequence  ISSDDLISLTTELLLWRSSWPTLATAVRQFSQGIVSNEIETALNSSIASEKVSDALGVILCVDQSDEQLSQEQRKSRKKA
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   382.......390.........400.........410.........420.........430.........440........ .450......
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Query Sequence  LADAFPAVNFEREQSDLPEFCELWPIHRDLQQTRLKNTVLPSGLLFVAHKYDPTTPWINARKMADKF. . . . . SAPLLTIN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIP
Template Known Secondary structure  ......................................G

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   511........520.........530.........540.........550..
 
   457..460.........470.........
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Query Sequence  GDGHTLALAGTNLCVDEAVVRHL
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Template Conservation     
                 

Template Sequence  DAGHAINTMEDAVKILLPAVFFL
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SS

B
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   553......560.........570.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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