Job Description P34211 Confidence 98.23% Date Thu Jan 5 11:53:05 GMT 2012 Rank 163 Aligned Residues 134 % Identity 14% Template c2bklB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity Resolution 1.5 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	Y	T	D	T	G	K	D	V	S	D	E	N	I	P	L	V	R	L	A	M	T	K	L	P	A	K	S	K	R	K	G	S	V	I	I	I	S	G	G	P	G	L	P	G	I	N	P	Y	I	N	F	D	W	P	V	T	N	L	R	E	S	W	D	I	I	G	F	D	P	R	G	V	G	Q	S	F	P	A
Query Conservation
Alig confidence														.	.	.	.	.																																									.	.																				.	.
Template Conservation														.	.	.	.	.																																									.	.																				.	.
Template Sequence		V	F	Y	A	S	K	D	G	T	K	V	P	.	.	.	.	.	M	F	V	V	H	R	K	D	L	K	R	D	G	N	A	P	T	L	L	Y	G	Y	G	G	F	N	V	N	M	E	A	N	F	R	S	S	I	L	P	W	.	.	L	D	A	G	G	V	Y	A	V	A	N	L	R	G	G	G	E	Y	G	.	.
Template Known Secondary structure							T	T	S					.	.	.	.	.							T	T				S	S												T	T									G	G	G				.	.			T	T									T	T	S	S	T	T		.	.
Template Predicted Secondary structure														.	.	.	.	.																																									.	.																				.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.						.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.			.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.							.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.
Query Sequence		I	N	C	Q	Q	S	N	Q	E	R	L	V	N	V	S	E	K	Q	L	I	L	Q	K	I	N	A	C	I	H	N	T	G	A	E	V	I	R	H	I	G	S	H	E	A	V	Y	D	I	E	R	I	R	Q	A	L	.	.	.	.	.	.	G	D	K	Q	L	T	A	V	A	Y	S	Y	G	T	Q	I	A	A	L
Query Conservation																																																									.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.																	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	W	H	D	A	G	R	L	D	.	.	.	.	.	K	K	Q	N	V	F	D	D	F	H	A	A	A	E	Y	L	V	Q	Q	K	Y	T	Q	P	K	R	L	A	I	Y	G	G	S	N	G	G	L	L	V	G	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S	G	G	.	.	.	.	.	G	T																	T	T	S			G	G	G							T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Template SS confidence
																										491	.	.	.	.	.	.	.	.	500						.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	E	R	F	P	S	S	I	R	S	I	V	F	D	G	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	T	Q	R	P	E	L	Y	G	A	V	V	C	A	V	P	L
Template Known Secondary structure							G	G	G		S						S
Template Predicted Secondary structure
Template SS confidence
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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