Job Description P76103 Confidence 100.00% Date Thu Jan 5 12:18:58 GMT 2012 Rank 1 Aligned Residues 364 % Identity 17% Template c3qe7A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa Resolution 2.78 Å

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		5	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure					.																																																									.	.
Query SS confidence					.																																																									.	.
Query Sequence		S	I	P	.	P	P	T	L	L	A	G	F	L	A	V	L	I	G	Y	A	S	S	A	A	I	I	W	Q	A	A	I	V	A	G	A	T	T	A	Q	I	S	G	W	M	T	A	L	G	L	A	M	G	V	S	T	L	T	L	T	L	.	.	W	Y	R	V	P	V	L	T	A	W	S	T	P	G	A	A	L	L
Query Conservation					.																																																									.	.
Alig confidence					.														.	.	.	.																	.	.	.	.	.	.	.																	.	.
Template Conservation																			.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		R	P	P	L	L	Q	T	I	P	L	S	L	Q	H	L	F	A	.	.	.	.	M	F	G	A	T	V	L	V	P	V	L	F	H	I	N	P	.	.	.	.	.	.	.	A	T	V	L	L	F	N	G	I	G	T	L	L	Y	L	F	I	C	K	G	K	I	P	A	Y	L	G	S	S	F	A	F	I	S	P	V
Template Known Secondary structure																			.	.	.	.											T	T	T	S			.	.	.	.	.	.	.																		T	T	T										G	G	G
Template Predicted Secondary structure																			.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.								.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	G	L	Q	G	L	T	L	N	E	A	I	G	V	F	I	V	T	N	A	L	I	V	L	C	G	I	T	G	L	F	.	.	.	A	R	L	M	R	I	I	P	H	S	L	A	A	A	M	L	A	G	I	L	L	R	F	G	L	Q	A	F	A	S	L	D	G	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																		.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																													.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		L	L	L	.	L	P	L	G	Y	E	V	A	L	G	G	F	I	M	C	G	V	L	F	C	L	V	S	F	I	V	K	K	A	G	T	G	W	L	D	V	L	F	P	P	A	A	M	G	A	I	V	A	V	I	G	L	E	L	A	G	V	A	A	G	M	A	G	L	L	P	A	E	G	Q	T	P	D	S	K	T
Template Known Secondary structure					.	G	G	G																									T	T		S																																T	S	S		B	T	T	B
Template Predicted Secondary structure					.
Template SS confidence
		80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
					147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																			.	.														.	.	.
Query SS confidence		.	.	.																																																			.	.														.	.	.
Query Sequence		.	.	.	Q	F	T	L	C	G	S	M	L	L	V	W	L	A	T	K	A	V	A	P	R	Y	A	V	I	A	A	M	I	I	G	I	V	I	V	I	A	Q	G	D	V	V	T	T	D	V	V	F	K	P	.	.	V	L	P	T	Y	I	T	P	D	F	S	F	A	.	.	.	H	S	L	S	V	A	L	P	L
Query Conservation		.	.	.																																																			.	.														.	.	.
Alig confidence		.	.	.																																																			.	.														.	.	.
Template Conservation
Template Sequence		I	I	I	S	I	T	T	L	A	V	T	V	L	G	S	V	L	F	R	G	F	L	A	I	I	P	I	L	I	G	V	L	V	G	Y	A	L	S	F	A	M	G	I	V	D	T	T	P	I	I	N	A	H	W	F	A	L	P	T	L	Y	T	P	R	F	E	W	F	A	I	L	T	I	L	P	A	A	L	V	V
Template Known Secondary structure																		S	S	S	T	T	T	T	T																				T	T	S	S					S		S	S																			T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	V	T	M	A	S	Q	N	A	P	G	I	A	A	M	K	A	A	G	Y	S	A	P	V	S	P	L	I	V	F	T	G	L	L	A	L	V	F	S	P	F	G	V	Y	S	V	G	I	A	A	I	T	A	A	I	C	Q	S	P	E	A	H	P	D	K	D	Q	R	W	L	A	A	A	V	A	G	I	F	Y
Query Conservation
Alig confidence																																																																			.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.
Template Sequence		I	A	E	H	V	G	H	L	V	V	T	A	N	I	V	K	K	D	L	L	R	D	P	G	L	H	R	S	M	F	A	N	G	L	S	T	V	I	S	G	F	F	G	S	T	P	N	T	T	Y	G	E	N	I	G	V	M	A	I	T	R	V	Y	S	T	.	.	.	.	.	W	V	I	G	G	A	A	I	F	A
Template Known Secondary structure																	T	S		T																								T																		T	B				.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.						.	.	.	.	.	.	310	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.								.	.
Predicted Secondary structure																																							.	.	.																																.	.	.	.	.	.	.
Query SS confidence																																							.	.	.																																.	.	.	.	.	.	.
Query Sequence		L	L	A	G	L	F	G	S	A	I	T	G	M	M	A	A	L	P	V	S	W	I	Q	M	L	A	G	L	A	L	L	S	T	I	G	G	S	.	.	.	L	Y	Q	A	L	H	N	E	R	E	R	D	A	A	V	V	A	F	L	V	T	A	S	G	L	T	L	V	G	I	G	.	.	.	.	.	.	.	S	A
Query Conservation																																							.	.	.																																.	.	.	.	.	.	.
Alig confidence								.																															.	.	.																																.	.	.	.	.	.	.
Template Conservation								.
Template Sequence		I	L	L	S	C	V	.	G	K	L	A	A	A	I	Q	M	I	P	L	P	V	M	G	G	V	S	L	L	L	Y	G	V	I	G	A	S	G	I	R	V	L	I	E	S	K	V	D	Y	N	K	A	Q	N	L	I	L	T	S	V	I	L	I	I	G	V	S	G	A	K	V	N	I	G	A	A	E	L	K	G	M
Template Known Secondary structure					T			.								T	T	S																											T	T	S		T	T	S																						S	S	S
Template Predicted Secondary structure								.
Template SS confidence
		314	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	G	L	I	A	G	G	V	C	Y	V	V	L	N	L	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	A	T	I	V	G	I	G	L	S	L	I	F	K	L	I	S
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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