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Job DescriptionP76103
Confidence100.00%DateThu Jan 5 12:18:58 GMT 2012
Rank1Aligned Residues364
% Identity17%Templatec3qe7A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa
Resolution2.78 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  SIP. PPTLLAGFLAVLIGYASSAAIIWQAAIVAGATTAQISGWMTALGLAMGVSTLTLTL. . WYRVPVLTAWSTPGAALL
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Template Sequence  RPPLLQTIPLSLQHLFA. . . . MFGATVLVPVLFHINP. . . . . . . ATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPV
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Query Sequence  VTGLQGLTLNEAIGVFIVTNALIVLCGITGLF. . . ARLMRIIPHSLAAAMLAGILLRFGLQAFASLDG. . . . . . . . . . . .
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Template Sequence  LLL. LPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKT
Template Known Secondary structure  .GGG
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   80.. .......90.........100.........110.........120.........130.........140.........150........
 
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Query Sequence  . . . QFTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVIVIAQGDVVTTDVVFKP. . VLPTYITPDFSFA. . . HSLSVALPL
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Template Sequence  IIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVV
Template Known Secondary structure  SSSTTTTTTTSSS
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   159160.........170.........180.........190.........200.........210.........220.........230........
 
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Query Sequence  FLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFY
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Template Sequence  IAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYST. . . . . WVIGGAAIFA
Template Known Secondary structure  TS
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Query Sequence  LLAGLFGSAITGMMAALPVSWIQMLAGLALLSTIGGS. . . LYQALHNERERDAAVVAFLVTASGLTLVGIG. . . . . . . SA
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Template Sequence  ILLSCV. GKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGM
Template Known Secondary structure  T

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   314..... 320.........330.........340.........350.........360.........370.........380.........390..
 
   369370.........380......
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Query Sequence  FWGLIAGGVCYVVLNLIA
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Template Sequence  ALATIVGIGLSLIFKLIS
Template Known Secondary structure  T


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   393......400.........410
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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