Job Description P33012 Confidence 99.98% Date Thu Jan 5 11:50:47 GMT 2012 Rank 4 Aligned Residues 154 % Identity 8% Template c1d5yD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:rob transcription factor; PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																									.															.	.	.	.	.
Query SS confidence																									.															.	.	.	.	.
Query Sequence		M	N	Y	E	I	K	Q	E	E	K	R	T	V	A	G	F	H	L	V	G	P	W	E	.	Q	T	V	K	K	G	F	E	Q	L	M	M	W	V	.	.	.	.	.	D	S	K	N	I	V	P	K	E	W	V	A	V	Y	Y	D	N	P	D	E	T	P	A	E	K	L	R	C	D	T	V	V	T	V	P	G	Y
Query Conservation																									.															.	.	.	.	.
Alig confidence																									.															.	.	.	.	.
Template Conservation
Template Sequence		P	E	H	K	F	V	T	L	E	D	T	P	L	I	G	V	T	Q	S	Y	S	C	S	L	E	Q	I	S	D	F	R	H	E	M	R	Y	Q	F	W	H	D	F	L	G	N	A	P	T	I	P	P	V	L	Y	G	L	N	E	T	R	P	S	Q	D	K	D	D	E	Q	E	V	F	Y	T	T	A	L	A	Q	D
Template Known Secondary structure																									G	G	G																		T	T		S	S			S												S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		F	T	L	P	E	N	S	E	G	V	I	L	T	E	I	T	G	G	Q	Y	A	V	A	V	A	R	V	V	G	D	D	F	A	K	P	W	Y	Q	F	F	N	S	L	L	Q	D	S	A	Y	E	M	L	P	K	P	C	F	E	V	Y	L	N	N	G	.	A	E	D	G	Y	W	D	I	E	M	Y	V	A	V	Q
Query Conservation																																																																		.
Alig confidence					.																																																													.
Template Conservation					.
Template Sequence		Q	A	D	.	G	Y	V	L	T	G	H	P	V	M	L	Q	G	G	E	Y	V	M	F	T	Y	E	G	L	G	T	G	V	Q	E	F	I	L	T	V	Y	G	T	C	M	P	M	L	N	L	T	R	R	K	G	Q	D	I	E	R	Y	Y	P	A	E	D	D	R	P	I	N	L	R	C	E	L	L	I	P	I	R
Template Known Secondary structure				G	.	G	G		T	T																				G	G	G											T					T	T			B		S	S								G	G	G				S											B
Template Predicted Secondary structure					.
Template SS confidence
		206	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		154	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		289	290

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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