Job Description P77269 Confidence 97.37% Date Thu Jan 5 12:27:02 GMT 2012 Rank 92 Aligned Residues 220 % Identity 11% Template d1ewka_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.20

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		30	.	.	.	.	.	.	.	.	.																		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.									.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query Sequence		E	M	T	I	G	A	I	Y	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	G	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	.	.	.	.	.	.	.	.	S	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	F	V	D	T	L	V
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	I	I	G	A	L	F	S	V	H	H	Q	P	P	A	E	K	V	P	E	R	K	C	G	E	I	R	E	Q	Y	G	I	Q	R	V	E	A	M	F	H	T	L	D	K	I	N	A	D	P	V	L	L	P	N	I	T	L	G	S	E	I	R	D	S	C	W	H	S	S	V	A	L	E	Q	S	I	E	F	I
Template Known Secondary structure		S									S	B					T	T	T	G	G	G	T					B		T	T	T	T																		S	S	S	S	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G	S	S	R	T	V	R	R	A	S	E	A	G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I
Query Conservation
Alig confidence								.																																						.	.	.	.
Template Conservation								.																																						.	.	.	.
Template Sequence		R	K	P	I	A	G	.	V	I	G	P	G	S	S	S	V	A	I	Q	V	Q	N	L	L	Q	L	F	D	I	P	Q	I	A	Y	S	A	T	S	I	D	L	S	D	K	.	.	.	.	T	L	Y	K	Y	F	L	R	V	V	P	S	D	T	L	Q	A	R	A	M	L	D	I	V	K	R	Y	N	W	T	Y	V
Template Known Secondary structure								.					S	S												G	G	G	T						S	S				G	G	G	G		T	.	.	.	.	T	T		T	T				S	S																	T	T
Template Predicted Secondary structure								.																																						.	.	.	.
Template SS confidence
		124	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		A	V	I	N	C	E	A	F	E	V	C	V	Q	R	R	K	G	F	E	E	V	L	K	S	R	V	P	G	A	Q	I	V	A	N	Q	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	.	.	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q
Query Conservation																																																										.	.
Alig confidence						.																																																				.	.
Template Conservation						.
Template Sequence		S	A	V	H	.	T	E	G	N	Y	G	E	S	G	M	D	A	F	K	E	L	A	A	Q	E	G	L	C	I	A	H	S	D	K	I	Y	S	N	A	G	E	K	S	F	D	R	L	L	R	K	L	R	E	R	L	P	K	A	R	V	V	V	C	F	C	E	G	M	T	V	R	G	L	L	S	A	M	R	R	L
Template Known Secondary structure						.		S	S																		T											T	T															T	T	T	T	T
Template Predicted Secondary structure						.
Template SS confidence
		228	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	A	G	K	I	A	V	F	G	S	D	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	V	G	E	F	S	L	I	G	S	D	G
Template Known Secondary structure		T			S								T	T
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions