Return to main results Retrieve Phyre Job Id

Job DescriptionP77269
Confidence95.56%DateThu Jan 5 12:27:02 GMT 2012
Rank100Aligned Residues222
% Identity13%Templated1dp4a_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40... ......50........ .60.........70. ........80.........90..
Predicted Secondary structure 




....
........





.....






Query SS confidence 













. . . .














. . . . . . . .












. . . . .




















Query Sequence  EMTIGAIYLDTQGY. . . . YAGVRQGVQDAAKDS. . . . . . . . SVQVQLIETNAQG. . . . . DISKESTFVDTLVARNVDAII
Query Conservation     



    
 
....      

  

   ........
  
 
       .....    
   
  

   

 

Alig confidence 













....














........












.....




















Template Conservation   
 

 
 
  
     
      
  


  

    

 
  
     

                  
     
 

Template Sequence  DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF
Template Known Secondary structure 
SS


STT
T
TTSSTT

B
TTSSB
TT

S
Template Predicted Secondary structure 




























Template SS confidence 















































































   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   93......100.........110.........120.........130.........140.........150.........160.........170..
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  LSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAF
Query Conservation 
           
       
 

                                               
        
Alig confidence 



























..

















































Template Conservation 


  
     
        

 

  
.. 
  

         
  
       
    
    
  
 

   
  
Template Sequence  LGPGCVYSAAPVGRFTAHWRVPLLTAGA. . PALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLG
Template Known Secondary structure 


ST

S

..

GGGG
TTTSTT
S

T

S

SS
Template Predicted Secondary structure 








..






















Template SS confidence 















































































   82.......90.........100......... 110.........120.........130.........140.........150.........
 
   173. .....180.........190.........200.........210.........220.........230.........240..... ....
Predicted Secondary structure  ..























.

Query SS confidence 

. .






































































.



Query Sequence  EV. . CVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA. GKIA
Query Conservation    ..   
  
    
                            
        
    
  
     

   
  . 

 
Alig confidence 

..









































..


























.



Template Conservation                         
                      ..   


              
   
       
Template Sequence  DDRPCFFIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKLLRAVRR. . KGRVIYICSSPDAFRNLMLLALNAGLTGEDYV
Template Known Secondary structure  S




TT
GGG..
SS
TT

TTT
Template Predicted Secondary structure 









..











Template SS confidence 















































































   160.........170.........180.........190.........200..... ....210.........220.........230.......
 
   250.....
Predicted Secondary structure 

Query SS confidence 





Query Sequence  VFGSDM
Query Conservation 


 
 
Alig confidence 





Template Conservation   
    
Template Sequence  FFHLDV
Template Known Secondary structure 
T
Template Predicted Secondary structure 

Template SS confidence 





   238.240...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions