Job Description P77269 Confidence 98.58% Date Thu Jan 5 12:27:02 GMT 2012 Rank 85 Aligned Residues 226 % Identity 14% Template c3td9A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:branched chain amino acid abc transporter, periplasmic PDBTitle: crystal structure of a leucine binding protein livk (tm1135) from2 thermotoga maritima msb8 at 1.90 a resolution Resolution 1.90 Å

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		32	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure													.	.	.																	.	.	.	.
Query SS confidence													.	.	.																	.	.	.	.
Query Sequence		T	I	G	A	I	Y	L	D	T	Q	G	.	.	.	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	.	.	.	.	S	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G	S	S	R	T
Query Conservation													.	.	.																	.	.	.	.
Alig confidence													.	.	.																	.	.	.	.
Template Conservation
Template Sequence		K	I	A	V	I	L	P	X	T	G	G	I	S	A	F	G	R	X	V	W	E	G	I	Q	I	A	H	E	E	K	P	T	V	L	G	E	E	V	E	L	V	L	L	D	T	R	S	E	K	T	E	A	A	N	A	A	A	R	A	I	D	K	E	K	V	L	A	I	I	G	E	V	A	S	A	H	S	L	A	I
Template Known Secondary structure										S	S	T	T																						T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	R	A	S	E	A	G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	N	C	E	A	F	E	V	C	V	Q	R	R	K	G	F	E	E
Query Conservation
Alig confidence																								.	.	.	.	.
Template Conservation																								.	.	.	.	.
Template Sequence		A	P	I	A	E	E	N	K	V	P	X	V	T	P	A	S	T	N	P	L	V	T	.	.	.	.	.	Q	G	R	K	F	V	S	R	V	C	F	I	D	P	F	Q	G	A	A	X	A	V	F	A	Y	K	N	L	G	A	K	R	V	V	V	F	T	D	V	E	Q	D	Y	S	V	G	L	S	N	F	F	I	N
Template Known Secondary structure								T	T						S	S				G	G	G	T	.	.	.	.	.	T	T		S	S				S	S																	T	S											T	T
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	K	S	R	V	P	G	A	Q	I	V	A	N	Q	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	Q	A	G	K	I	A	V	F	G	S	D	M	T	T	E	I	A	Q	E	L	E
Query Conservation
Alig confidence																					.	.	.
Template Conservation																					.	.	.
Template Sequence		K	F	T	E	L	G	G	Q	V	K	R	V	F	F	R	S	G	D	Q	.	.	.	D	F	S	A	Q	L	S	V	A	X	S	F	N	P	D	A	I	Y	I	T	G	Y	Y	P	E	I	A	L	I	S	R	Q	A	R	Q	L	G	F	T	G	Y	I	L	A	G	D	G	A	D	A	P	E	L	I	E	I	G	G
Template Known Secondary structure						T	T										T	T			.	.	.												T			S						S															T	T			S						G	G	G		S	T							G
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		265
Predicted Secondary structure
Query SS confidence
Query Sequence		N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		254

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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