Return to main results Retrieve Phyre Job Id

Job DescriptionP77269
Confidence98.70%DateThu Jan 5 12:27:02 GMT 2012
Rank82Aligned Residues228
% Identity14%Templatec3snrA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris.
Resolution1.49 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.. .......50....... ..60.........70.........80.........90.........100...
Predicted Secondary structure 






....





















Query SS confidence 














. . .














.













































Query Sequence  EKEMTIGAIYLDTQG. . . YYAGVRQGVQDAAKD. SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSR
Query Conservation   
   



    
 ...
      

  

  . 
  
 
           
   
  

   

 


          
Alig confidence 














...














.













































Template Conservation   
 
 

 
 
 

  
  
     
   
   


  
 
   
       
      

    
  


   
    
Template Sequence  TNEITVGISVTTTGPAAALGIPERNALEFVVKEISGHPIKIIVLDDGGDPTAATTNARRFVTESKADVIXGSSVTPPSVA
Template Known Secondary structure 




SSTTGGGGS
STT
TT
TS

S
SS
Template Predicted Secondary structure 























Template SS confidence 















































































   28.30.........40.........50.........60.........70.........80.........90.........100.......
 
   104.....110.........120.........130.........140.........150.........160.........170.........180...
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  TVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFE
Query Conservation   
       
 

                                               
             
  
  
Alig confidence 
























.......



































.










Template Conservation           

 
            .......                            
 

    .  
        
Template Sequence  ISNVANEAQIPHIALAPLPITPERA. . . . . . . KWSVVXPQPIPIXGKVLYEHXKKNNVKTVGYIGYSD. SYGDLWFNDLK
Template Known Secondary structure  T

SS




TTTT.......TT
S

TT

SS.
Template Predicted Secondary structure 











.......









.

Template SS confidence 















































































   108.110.........120.........130.. .......140.........150.........160........ .170.........
 
   184.....190.........200.........210.........220.........230.........240.........250.........260...
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  EVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQEL
Query Conservation    
                            
        
    
  
     

   
   

 


 
        
Alig confidence 





















..























































Template Conservation        
  
           
..       
     
 
                   
                    
Template Sequence  KQGEAXGLKIVGEERFARPDTS. . VAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGLIYQTHGAASXDFIRIA
Template Known Secondary structure  TT

TT
S
..


S

TT

S
GGG
S
Template Predicted Secondary structure 





..
















Template SS confidence 















































































   180.........190.........200. ........210.........220.........230.........240.........250.......
 
   264.
Predicted Secondary structure 
Query SS confidence 

Query Sequence  EN
Query Conservation    
Alig confidence 

Template Conservation    
Template Sequence  GK
Template Known Secondary structure  GG
Template Predicted Secondary structure 
Template SS confidence 

   258.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions