Job Description P77269 Confidence 96.04% Date Thu Jan 5 12:27:02 GMT 2012 Rank 98 Aligned Residues 213 % Identity 8% Template c3sajB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 1; PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain Resolution 2.50 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	E	K	E	M	T	I	G	A	I	Y	L	D	T	Q	G	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	S	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G	S	S	R	T	V
Query Conservation
Alig confidence																																																																		.
Template Conservation																																																																		.
Template Sequence		A	M	P	N	N	I	Q	I	G	G	L	F	P	N	Q	Q	S	Q	E	H	A	A	F	R	F	A	L	S	Q	L	T	E	P	P	K	L	L	P	Q	I	D	I	V	N	I	S	D	S	F	E	M	T	Y	R	F	C	S	Q	F	S	K	G	V	Y	.	A	I	F	G	F	Y	E	R	R	T	V	N	M	L	T
Template Known Secondary structure					S									S	S	S	S													T			S	S	S											T	T																T		S	.								T	T	T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	A	S	E	A	G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	N	C	E	A	F	E	V	C	V	Q	R	R	K	G	F	E	E	V
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Sequence		S	F	C	G	A	L	H	V	C	F	I	T	P	S	F	P	V	D	T	S	N	Q	F	V	L	Q	L	R	P	.	.	.	.	.	.	.	.	.	.	E	L	Q	E	A	L	I	S	I	I	D	H	Y	K	W	Q	T	F	V	Y	I	.	.	.	.	Y	D	A	D	R	G	L	S	V	L	Q	R	V	L	D	T
Template Known Secondary structure								T							S				S	S			T	T					S		.	.	.	.	.	.	.	.	.	.														T								.	.	.	.							T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.											110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	S	R	V	P	G	A	Q	I	V	A	N	Q	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	Q	A	G	K	I	A	V	F	G	S	D	M
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		A	A	E	K	.	.	N	W	Q	V	T	A	V	N	I	L	T	T	T	E	E	G	Y	R	M	L	F	Q	D	L	E	K	K	K	E	R	L	V	V	V	D	C	E	S	E	R	L	N	A	I	L	G	Q	I	V	K	L	E	K	N	G	I	G	Y	H	Y	I	L	A	N
Template Known Secondary structure						.	.	T								T	T	T																S	S	S																						T	T		S	S	T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		147	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions