Job Description P77269 Confidence 95.97% Date Thu Jan 5 12:27:02 GMT 2012 Rank 99 Aligned Residues 215 % Identity 13% Template c3om1A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor gluk5 (ka2); PDBTitle: crystal structure of the gluk5 (ka2) atd dimer at 1.7 angstrom2 resolution Resolution 1.68 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.									.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																														.	.	.	.	.	.	.	.																						.
Query SS confidence																														.	.	.	.	.	.	.	.																						.
Query Sequence		E	M	T	I	G	A	I	Y	L	D	T	Q	G	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	.	.	.	.	.	.	.	.	S	S	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	.	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G
Query Conservation																														.	.	.	.	.	.	.	.																						.
Alig confidence																														.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		S	L	R	M	A	A	I	L	D	D	Q	T	V	C	G	R	G	E	R	L	A	L	A	L	A	R	E	Q	I	N	G	I	I	E	V	P	A	K	A	R	V	E	V	D	I	F	E	L	Q	R	D	S	Q	Y	E	T	T	D	T	M	C	Q	I	L	P	K	G	V	V	S	V	L	G	P	S	S	S	P	A	S
Template Known Secondary structure											S		S	S	S	S																	S			S	S													S	S														G	G	G			S						S	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	R	T	V	R	R	A	S	E	A	G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	N	C	E	A	F	E	V	C	V	Q	R	R	K
Query Conservation
Alig confidence																												.	.	.	.	.																																									.	.
Template Conservation																												.	.	.	.	.																																									.	.
Template Sequence		A	S	T	V	S	H	I	C	G	E	K	E	I	P	H	I	K	V	G	P	E	E	T	P	R	L	.	.	.	.	.	Q	Y	L	R	F	A	S	V	S	L	Y	P	S	N	E	D	V	S	L	A	V	S	R	I	L	K	S	F	N	Y	P	S	A	S	L	I	C	A	K	A	.	.	E	C	L	L	R	L	E
Template Known Secondary structure													T							S				S	S			.	.	.	.	.	G	G	G	G	G	G					S																	T	T	S								S	S	T	.	.	T					T
Template Predicted Secondary structure																												.	.	.	.	.																																									.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.						110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	E	E	V	L	K	S	R	V	P	G	A	Q	I	V	A	N	Q	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	Q	A	G	K	I	A	V	F	G	S	D	M	T
Query Conservation
Alig confidence																								.	.	.	.	.
Template Conservation																								.	.	.	.	.
Template Sequence		E	L	V	R	G	F	L	I	S	K	E	T	L	S	V	R	M	L	D	D	R	D	.	.	.	.	.	P	T	P	L	L	K	E	I	R	D	D	K	V	S	T	I	I	I	D	A	N	A	S	I	S	H	L	V	L	R	K	A	S	E	L	G	M	T	S	A	F	Y	K	Y	I	L	T	T	M
Template Known Secondary structure										S	S	S												.	.	.	.	.												T								S															T	T	T	T	S	T	T								T
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.						.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions