Job Description P77269 Confidence 100.00% Date Thu Jan 5 12:27:02 GMT 2012 Rank 32 Aligned Residues 269 % Identity 12% Template c3mizB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli Resolution 1.91 Å

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		30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		E	M	T	I	G	A	I	Y	L	D	.	.	T	Q	G	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	S	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G	S	S	R	T	V	R	R
Query Conservation												.	.
Alig confidence												.	.																											.	.																																					.	.	.
Template Conservation																																								.	.																																					.	.	.
Template Sequence		S	N	T	F	G	I	I	T	D	Y	V	S	T	T	P	Y	S	V	D	I	V	R	G	I	Q	D	W	A	N	A	N	G	K	T	I	L	I	A	.	.	N	T	G	G	S	S	E	R	E	V	E	I	W	K	X	F	Q	S	H	R	I	D	G	V	L	Y	V	T	X	Y	R	R	I	V	D	P	.	.	.	E
Template Known Secondary structure												S	S	S		S	S	S														T	T							.	.			T	T															T	T																	.	.	.
Template Predicted Secondary structure																																								.	.																																					.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	E	A	G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	N	C	E	A	F	E	V	C	V	Q	R	R	K	G	F	E	E	V	L	K
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.
Template Sequence		S	G	D	V	S	I	P	T	V	X	I	N	C	R	P	Q	T	R	E	.	.	.	.	.	.	.	.	.	L	L	P	S	I	E	P	D	D	Y	Q	G	A	R	D	L	T	R	Y	L	L	E	R	G	H	R	R	I	G	Y	I	R	L	N	P	I	L	L	G	A	E	L	R	L	D	A	F	R	R	T	T	S
Template Known Secondary structure			T	T													S	S	T	T	.	.	.	.	.	.	.	.	.	S	S																					T	T			S								T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.										.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.							200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.																																													.	.
Query SS confidence														.	.	.	.	.	.																																													.	.
Query Sequence		S	R	V	P	G	A	Q	I	V	A	N	Q	.	.	.	.	.	.	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	.	.	Q	A	G	K	I	A	V	F	G	S	D	M	T	T	E	I
Query Conservation														.	.	.	.	.	.																																													.	.
Alig confidence														.	.	.	.	.	.																																													.	.
Template Conservation
Template Sequence		E	F	G	L	T	E	N	D	L	S	I	S	L	G	X	D	G	P	V	G	A	E	N	N	Y	V	F	A	A	A	T	E	X	L	K	Q	D	D	R	P	T	A	I	X	S	G	N	D	E	X	A	I	Q	I	Y	I	A	A	X	A	L	G	L	R	I	P	Q	D	V	S	I	V	G	F	D	D	F	R	T	V
Template Known Secondary structure			T	T			G	G	G									S	S	T	T	S															S	T	T			S					S	S														T	T			T	T	T	T						S	B
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	E	L	E	N	N	Q	V	L	K	A	V	V	D	I	S	G	K	K	M	G	N	A	V	F	A	Q	T	L	K	V	I	N	K	Q	A	D	G	E	K	V	I	Q	V	P	I	D	L	Y	T	K	T	E	D	G
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence		T	X	A	L	.	.	.	K	P	E	L	T	T	A	A	L	P	Y	Y	D	L	G	R	E	G	A	K	W	L	N	D	L	I	A	G	E	K	I	Y	P	G	S	R	V	V	S	C	K	L	V	E	R	S	S	A	A
Template Known Secondary structure			T	T	S	.	.	.	S	S			B																							S					S	S												S	S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		285	.	.	.				.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions