Job Description P77269 Confidence 100.00% Date Thu Jan 5 12:27:02 GMT 2012 Rank 21 Aligned Residues 273 % Identity 15% Template c3l6uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum Resolution 1.90 Å

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		31	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		M	T	I	G	A	I	Y	L	D	T	.	Q	G	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	S	V	Q	V	Q	L	I	E	T	N	A	Q	G	D	I	S	K	E	S	T	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G	S	S	R	T	V	R	R	A	S
Query Conservation												.
Alig confidence												.																										.	.
Template Conservation																																						.	.
Template Sequence		N	I	V	G	F	T	I	V	N	D	K	H	E	F	A	Q	R	L	I	N	A	F	K	A	E	A	K	A	N	K	Y	E	A	L	V	A	.	.	T	S	Q	N	S	R	I	S	E	R	E	Q	I	L	E	F	V	H	L	K	V	D	A	I	F	I	T	T	L	D	D	V	Y	I	G	S	A	I	E	E	A	K
Template Known Secondary structure									S		S		S																	T	T							.	.			S	S															T	T		S							S		T	T	T	T
Template Predicted Secondary structure																																						.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	N	C	E	A	F	E	V	C	V	Q	R	R	K	G	F	E	E	V	L	K	S	R
Query Conservation
Alig confidence																																																		.	.
Template Conservation																																																		.	.
Template Sequence		K	A	G	I	P	V	F	A	I	D	R	X	I	R	S	D	A	V	V	S	S	I	T	S	N	N	Q	X	I	G	E	Q	L	A	S	Y	I	K	N	E	L	I	K	Q	T	G	R	S	.	.	T	G	R	I	V	E	I	T	G	T	A	N	V	Y	T	T	N	E	R	H	R	G	F	L	K	G	I	E	N	E
Template Known Secondary structure			T	T							S	S					T	T		S																											S		S	.	.										S	T	T																T	T
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	G	A	Q	I	V	A	N	Q	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	Q	A	G	K	I	A	V	F	G	S	D	M	T	T	E	I	A	Q	E	L	E	N	N	Q	V	L
Query Conservation
Alig confidence																																																												.																			.
Template Conservation																																																												.																			.
Template Sequence		P	T	L	S	I	V	D	S	V	S	G	N	Y	D	P	V	T	S	E	R	V	X	R	Q	V	I	D	S	G	I	P	F	D	A	V	Y	C	H	N	D	D	I	A	X	G	V	L	E	A	L	K	K	A	K	I	S	G	K	.	I	V	V	G	I	D	G	N	R	A	I	L	E	A	V	D	X	K	.	S	X
Template Known Secondary structure		T	T										T	T															T	T				S					S	S														T	T					.																	T	T	.	S	S
Template Predicted Secondary structure																																																												.																			.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	V	V	D	I	S	G	K	K	M	G	N	A	V	F	A	Q	T	L	K	V	I	N	K	Q	A	D	G	E	K	V	I	Q	V	P	I	D	L	Y	T
Query Conservation
Alig confidence																																.
Template Conservation																																.
Template Sequence		D	A	T	V	V	Q	S	A	E	E	X	X	K	V	A	F	S	A	L	K	L	H	T	K	N	K	K	I	P	D	.	R	F	Y	T	Y	S	Y	L	Y	D
Template Known Secondary structure																									T	T					S	.
Template Predicted Secondary structure																																.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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