Job Description P77269 Confidence 97.16% Date Thu Jan 5 12:27:02 GMT 2012 Rank 94 Aligned Residues 214 % Identity 11% Template c3h6hB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form Resolution 2.90 Å

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		31	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.									.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure												.																			.	.	.	.	.	.	.	.													.
Query SS confidence												.																			.	.	.	.	.	.	.	.													.
Query Sequence		M	T	I	G	A	I	Y	L	D	T	.	Q	G	Y	Y	A	G	V	R	Q	G	V	Q	D	A	A	K	D	S	.	.	.	.	.	.	.	.	S	V	Q	V	Q	L	I	E	T	N	A	Q	.	G	D	I	S	K	E	S	T	F	V	D	T	L	V	A	R	N	V	D	A	I	I	L	S	A	V	S	E	N	G
Query Conservation												.																			.	.	.	.	.	.	.	.													.
Alig confidence												.																			.	.	.	.	.	.	.	.													.																							.
Template Conservation																																																																										.
Template Sequence		L	R	F	G	G	I	F	E	Y	V	E	S	G	P	M	G	A	E	E	L	A	F	R	F	A	V	N	T	I	N	R	N	R	T	L	L	P	N	T	T	L	T	Y	D	T	Q	K	I	N	L	Y	D	S	F	E	A	S	K	K	A	C	D	Q	L	S	L	G	V	A	A	I	F	.	G	P	S	H	S	S	S
Template Known Secondary structure												T	T	S	S																			S	S	S	S	S	S												T	T																		S				.			S	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	R	T	V	R	R	A	S	E	A	G	I	P	V	I	C	Y	N	T	C	I	N	Q	K	G	V	D	K	Y	V	S	A	Y	L	V	G	D	P	L	E	F	G	K	K	L	G	N	A	A	A	D	Y	F	I	A	N	K	I	D	Q	P	K	I	A	V	I	N	C	E	A	F	E	V	C	V	Q	R	R	K
Query Conservation
Alig confidence																												.	.	.	.	.	.																																								.	.	.	.	.
Template Conservation																												.	.	.	.	.	.																																								.	.	.	.	.
Template Sequence		A	N	A	V	Q	S	I	C	N	A	L	G	V	P	H	I	Q	T	R	W	K	H	Q	V	S	D	.	.	.	.	.	.	N	K	D	S	F	Y	V	S	L	Y	P	D	F	S	S	L	S	R	A	I	L	D	L	V	Q	F	F	K	W	K	T	V	T	V	V	Y	D	D	S	.	.	.	.	.	T	G	L	I
Template Known Secondary structure												T	T			B				S						S	S	.	.	.	.	.	.					S					S	B		T	T	T												T	T		S							S	S	T	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.																																								.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.							110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.						.	150	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	E	E	V	L	K	S	R	V	P	G	A	Q	I	V	A	N	Q	E	G	T	V	L	D	K	A	I	S	V	G	E	K	L	I	I	S	T	P	D	L	N	A	I	M	G	E	S	G	G	A	T	L	G	A	V	K	A	V	R	N	Q	N	Q	A	G	K	I	A	V	F	G	S	D	M	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	Q	E	L	I	K	A	P	S	R	Y	N	L	R	L	K	I	R	Q	L	P	A	D	T	K	D	A	K	P	L	L	K	E	M	K	R	G	K	E	F	H	V	I	F	D	C	S	H	E	M	A	A	G	I	L	K	Q	A	L	A	M	G	M	M	T	E	Y	Y	H	Y	I	F	T	T	L
Template Known Secondary structure			S					T	G	G	G	T	S	S										S	S	G	G	G											T	T								S																T			S	T	T								S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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